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requires not required
2009-01-08
cjfield
s
requir
e
s
n
ot required
commit
|
commitdiff
|
tree
2009-01-08
cjfields
*
c
o
nvert over to
B
io
:
:
R
oot
:
:Test and update some to
.
.
.
commit
|
commitdiff
|
tree
2009-01-08
cjfie
l
ds
*
conv
e
rt to
B
i
o
::Ro
o
t::Tes
t
commit
|
commitdiff
|
tree
2009-01-08
cjfields
* co
n
vert
t
o Bio
:
:Ro
o
t
::T
e
st
commit
|
commitdiff
|
tree
2009-01-07
cjfields
Getting
a faile
d
t
e
s
t
using latest EnsEMBL
p
e
rl API
.
.
.
commit
|
commitdiff
|
tree
2009-01-07
cjfiel
d
s
Ca
t
ch version, skip
tests if
v
ersion
isn't su
p
ported
.
.
.
commit
|
commitdiff
|
tree
2008-11-14
cjfiel
d
s
[
b
ug
2644
]
commit
|
commitdiff
|
tree
2008-08-22
cjfie
l
d
s
* a
d
d_sequences option (adds sequenc
e
s t
o
an alignment
.
.
.
commit
|
commitdiff
|
tree
2008-07-30
cjfields
p
atching the correct Primer3
.
pm (not Bi
o
:
:
Tools::Primer3
.
pm)
commit
|
commitdiff
|
tree
2008-06-19
cjfields
b
ug 2523
commit
|
commitdiff
|
tree
2008-04-15
cjfields
U
p
d
a
te
to 0
.
81 params
.
Need to
set up
t
e
s
ts f
o
r this
.
.
.
commit
|
commitdiff
|
tree
2008-02-27
cjfields
b
u
g
2
460
commit
|
commitdiff
|
tree
2008-01-15
c
j
field
s
test
commit
|
commitdiff
|
tree
2007-07-16
cjfields
bu
g
220
2
commit
|
commitdiff
|
tree
2007-07-16
cj
f
ields
bu
g
2299
commit
|
commitdiff
|
tree
2007-07-01
cj
f
ield
s
bug
2
299
commit
|
commitdiff
|
tree
2007-04-02
cjfields
wrapper for
t
R
NAsc
a
nS
E
commit
|
commitdiff
|
tree
2007-03-30
cjfields
sm
a
l
l
fix
:
RNAMoti
f
can
h
ave empty fil
e
s
(
w
ill a
d
d
.
.
.
commit
|
commitdiff
|
tree
2007-03-29
cj
f
ields
fix some funkin
e
ss with pipes; may switch to IP
C
:
:Run
.
.
.
commit
|
commitdiff
|
tree
2007-03-20
cjfie
l
d
s
All infernal
p
rogra
m
s now wor
k
; needs
s
o
me more fine
.
.
.
commit
|
commitdiff
|
tree
2007-03-19
cjf
i
elds
bug
2241
commit
|
commitdiff
|
tree
2007-03-14
cjfiel
d
s
small fixes
commit
|
commitdiff
|
tree
2007-03-13
cjfields
IPC::
R
un (req
u
ired for
G
limmer,
G
e
n
emark wrapper
s
)
commit
|
commitdiff
|
tree
2007-03-13
cjfie
l
ds
Gen
e
Ma
r
k, Glimmer
wrapper
m
odules
,
tests,
a
nd test
.
.
.
commit
|
commitdiff
|
tree
2007-02-17
cjfields
cmsearch
n
ow
s
works; rest hopefully b
y
Mon
.
commit
|
commitdiff
|
tree
2007-02-16
c
j
fields
I
n
fernal w
r
a
pper (not f
u
nctional yet)
commit
|
commitdiff
|
tree
2007-02-07
cjfield
s
upd
a
tes and
s
mal
l
t
w
eaks
commit
|
commitdiff
|
tree
2007-02-07
cjfie
l
ds
erpin wrapper (needs
m
ore
wor
k
.
.
.
)
commit
|
commitdiff
|
tree
2007-02-05
cj
f
i
elds
A
llow out
f
ile or tem
p
file (
f
o
r
downstre
a
m wo
r
k)
commit
|
commitdiff
|
tree
2007-02-04
cjf
i
elds
o
b
scu
r
e origins a bit mo
r
e (heh
e
he
commit
|
commitdiff
|
tree
2007-02-04
cjfiel
d
s
RNAMotif tools wrapper
commit
|
commitdiff
|
tree
2006-10-26
cjfields
Chang
e
to T
e
st::More
commit
|
commitdiff
|
tree
2006-10-26
cjfields
Add Test::More (apparent
l
y wasn't
a
d
d
e
d)
commit
|
commitdiff
|
tree
2006-10-26
cjfi
e
lds
Add some POD for
C
LOSE
(
)
commit
|
commitdiff
|
tree
2006-10-26
cjf
i
elds
Added CLOSE() tied
f
i
l
eha
n
d
l
e metho
d
(bug 2126)
commit
|
commitdiff
|
tree
2006-10-13
cjf
i
e
lds
Rev
e
rt tes
t
s; r
e
peated calls n
o
w w
o
rk (ex
p
ected beh
a
vior)
commit
|
commitdiff
|
tree
2006-10-10
cjf
i
elds
Fix
tests; need to l
o
o
k
at Analy
s
is::
s
oap::results()
commit
|
commitdiff
|
tree
2006-07-11
cjfie
l
d
s
Bug 2040
commit
|
commitdiff
|
tree