repo.or.cz
/
bioperl-run.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
sync with trunk
2009-09-30
c
j
f
i
eld
s
sync with trunk
commit
|
commitdiff
|
tree
2009-09-29
c
j
fields
sync with main trunk
commit
|
commitdiff
|
tree
2009-02-25
cj
f
i
e
lds
merge last commit to branch
commit
|
commitdiff
|
tree
2009-02-24
cjf
i
elds
bump version
commit
|
commitdiff
|
tree
2009-02-24
cjfields
syn
c
with trunk
commit
|
commitdiff
|
tree
2009-02-11
cjfields
sync with
t
r
u
nk
commit
|
commitdiff
|
tree
2009-02-01
cjfields
bran
c
h-s
p
ecif
i
c versio
n
ing
commit
|
commitdiff
|
tree
2009-02-01
cjf
i
elds
syc wit
h
tru
n
k
commit
|
commitdiff
|
tree
2009-01-28
cjfields
forgot t
o
change versioni
n
g, will reta
g
commit
|
commitdiff
|
tree
2009-01-28
cjfi
e
lds
sync w
i
th run trunk
commit
|
commitdiff
|
tree
2009-01-13
cjfields
* small updates
commit
|
commitdiff
|
tree
2009-01-13
cjfields
Re
m
ove P
i
se-related
stuff, upd
a
te with other dependencies
commit
|
commitdiff
|
tree
2009-01-13
cjfiel
d
s
A
dd
DEPENDENCI
E
S file
.
commit
|
commitdiff
|
tree
2009-01-13
cjfields
R
e
mo
v
e Pise-r
e
lated
e
x
amples
(moved into bio
p
erl-pise)
commit
|
commitdiff
|
tree
2009-01-13
cjfields
Remove Pise-related modu
l
e (mo
v
ed into bioperl-pise)
commit
|
commitdiff
|
tree
2009-01-13
cjfields
Remove
Pise
m
o
d
ules and tests (moved into bi
o
p
e
rl-pise)
commit
|
commitdiff
|
tree
2009-01-13
cjfields
Remove
Pise modules and t
e
sts (mo
v
ed int
o
b
i
o
perl-pi
s
e)
commit
|
commitdiff
|
tree
2009-01-10
cjfields
Don't TODO the test,
actually attempt t
o
r
u
n it and
.
.
.
commit
|
commitdiff
|
tree
2009-01-10
cjfields
Actually make tests complete
(no
t
skipped i
f
there
.
.
.
commit
|
commitdiff
|
tree
2009-01-10
cj
f
ields
TOD
O
f
a
i
ling tes
t
(problem with SOAP
p
r
otocol)
commit
|
commitdiff
|
tree
2009-01-10
cjf
i
eld
s
*
finish up bioperl-ru
n
conversion
commit
|
commitdiff
|
tree
2009-01-08
cj
f
ields
requ
i
res
not r
e
qui
r
ed
commit
|
commitdiff
|
tree
2009-01-08
cjfields
* convert o
v
er to
B
io:
:
R
o
o
t::Test and
update some
t
o
.
.
.
commit
|
commitdiff
|
tree
2009-01-08
cjfie
l
ds
*
convert to B
i
o::Root::Test
commit
|
commitdiff
|
tree
2009-01-08
cjfie
l
ds
* c
o
nvert to Bi
o
::
R
o
o
t::Test
commit
|
commitdiff
|
tree
2009-01-07
cjfield
s
Getting a fail
e
d
t
est
u
sing
latest EnsEMB
L
perl A
P
I
.
.
.
commit
|
commitdiff
|
tree
2009-01-07
cjf
i
elds
Cat
c
h version, s
k
ip
tests if vers
i
o
n
isn
'
t suppo
r
ted
.
.
.
commit
|
commitdiff
|
tree
2008-11-14
cjf
i
e
lds
[
bug 2
6
4
4
]
commit
|
commitdiff
|
tree
2008-08-22
cjfiel
d
s
* add_
s
equences op
t
io
n
(adds seque
n
c
e
s
t
o an alignment
.
.
.
commit
|
commitdiff
|
tree
2008-07-30
cjfields
patching
the correc
t
P
rime
r
3
.
p
m
(not
B
io
:
:
T
ools::Primer3
.
pm)
commit
|
commitdiff
|
tree
2008-06-19
cj
f
iel
d
s
bug 2523
commit
|
commitdiff
|
tree
2008-04-15
c
jfields
U
p
d
a
t
e to 0
.
81 pa
r
ams
.
N
eed to se
t
up tests for th
i
s
.
.
.
commit
|
commitdiff
|
tree
2008-02-27
cjf
i
elds
bug 246
0
commit
|
commitdiff
|
tree
2008-01-15
cjfi
e
lds
test
commit
|
commitdiff
|
tree
2007-07-16
cjfiel
d
s
bug
2
202
commit
|
commitdiff
|
tree
2007-07-16
cjfi
e
ld
s
bug 229
9
commit
|
commitdiff
|
tree
2007-07-01
cjfields
bug 2299
commit
|
commitdiff
|
tree
2007-04-02
c
j
fields
wrapper f
o
r
tRNAscanSE
commit
|
commitdiff
|
tree
2007-03-30
c
j
fields
small fix: RN
A
M
o
t
i
f can hav
e
empty files (will a
d
d
.
.
.
commit
|
commitdiff
|
tree
2007-03-29
cjfields
f
i
x some fun
k
ines
s
wi
t
h pipes
;
may switch to IPC::Run
.
.
.
commit
|
commitdiff
|
tree
2007-03-20
cjfields
All
in
f
e
r
n
al pro
g
rams
now work; need
s
some m
o
re
f
ine
.
.
.
commit
|
commitdiff
|
tree
2007-03-19
cjfie
l
ds
bug 2241
commit
|
commitdiff
|
tree
2007-03-14
c
j
fi
e
lds
small fi
x
es
commit
|
commitdiff
|
tree
2007-03-13
c
j
fiel
d
s
IPC::Run (required f
o
r Glimmer,
Genemark wra
p
p
e
rs)
commit
|
commitdiff
|
tree
2007-03-13
cjfields
GeneMark, Glim
m
er wrap
p
er modules, te
s
ts,
a
nd test
.
.
.
commit
|
commitdiff
|
tree
2007-02-17
cjfields
c
msearch nows works; rest hop
e
f
ully by Mon
.
commit
|
commitdiff
|
tree
2007-02-16
cjfie
l
ds
Infernal wra
p
per (not functional
yet)
commit
|
commitdiff
|
tree
2007-02-07
cjfie
l
ds
updates and sm
a
ll twe
a
ks
commit
|
commitdiff
|
tree
2007-02-07
cjfields
erpin wrapp
e
r (
n
eeds m
o
re wor
k
.
.
.
)
commit
|
commitdiff
|
tree
2007-02-05
cjf
i
eld
s
Allo
w
outfile or tempfile
(
f
or
downstre
a
m work)
commit
|
commitdiff
|
tree
2007-02-04
cjfields
o
bs
c
ure origins a bit more (hehehe
commit
|
commitdiff
|
tree
2007-02-04
cjfields
R
N
A
M
otif tools
w
rapper
commit
|
commitdiff
|
tree
2006-10-26
cjfields
Change t
o
Tes
t
::More
commit
|
commitdiff
|
tree
2006-10-26
cjfields
Add Test::Mo
r
e (apparently was
n
't
a
dded)
commit
|
commitdiff
|
tree
2006-10-26
cj
f
iel
d
s
Add some POD for CLOS
E
()
commit
|
commitdiff
|
tree
2006-10-26
cj
f
ields
A
d
ded
CLOS
E
() tied filehandle method (bug 2126)
commit
|
commitdiff
|
tree
2006-10-13
cjfields
Re
v
ert
t
es
t
s; rep
e
at
e
d calls
n
ow work (expected beha
v
ior)
commit
|
commitdiff
|
tree
2006-10-10
cjfield
s
F
ix test
s
; need t
o
lo
o
k at Analysis::soap::result
s
()
commit
|
commitdiff
|
tree
2006-07-11
cjfiel
d
s
Bu
g
2
040
commit
|
commitdiff
|
tree