| 2016-09-13 |
Chris Fields | logic fix for #182
|
commit | commitdiff | tree |
| 2016-09-11 |
Chris Fields | add note about upcoming GI changes
|
commit | commitdiff | tree |
| 2016-09-08 |
Chris Fields | get authors script kinda working
|
commit | commitdiff | tree |
| 2016-09-07 |
Chris Fields | Fix for revcom issues with MAF format from @dandaman...
|
commit | commitdiff | tree |
| 2016-09-07 |
Chris Fields | add some tests, refers to #170
|
commit | commitdiff | tree |
| 2016-08-02 |
Chris Fields | possible fix for #187
|
commit | commitdiff | tree |
| 2016-07-16 |
Chris Fields | bump RC
|
commit | commitdiff | tree |
| 2016-07-16 |
Chris Fields | requires a newer (but still old) perl
|
commit | commitdiff | tree |
| 2016-07-16 |
Chris Fields | update Changes (first of a few)
|
commit | commitdiff | tree |
| 2016-07-11 |
Chris Fields | RT 103272 - fix for deleting features that have decimals
|
commit | commitdiff | tree |
| 2016-07-11 |
Chris Fields | Incorporate recommended fix for RT98374; notably tests...
|
commit | commitdiff | tree |
| 2016-07-11 |
Chris Fields | add some tests for RT ticket, not a true bug but indicates...
|
commit | commitdiff | tree |
| 2016-07-09 |
Chris Fields | rm tests for modules, will check CI
|
commit | commitdiff | tree |
| 2016-07-09 |
Chris Fields | [ci skip] remove some deprecated/redundant modules
|
commit | commitdiff | tree |
| 2016-07-08 |
Chris Fields | Merge branch 'master' of github.com:bioperl/bioperl...
|
commit | commitdiff | tree |
| 2016-07-08 |
Chris Fields | add 5.24
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | add MANIFEST to ignore
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | add MANIFEST file on the fly
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | Merge branch 'master' of github.com:bioperl/bioperl...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | remove SOAP::Lite for realz, then test what is going...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | Revert "Merge pull request #150 from jkeenan/missing_manifest"
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | remove the module and test, we will remove MANIFEST...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | Revert "Removed Mitoprot support, a service that is...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | markdownize file, minimal changes (looks fairly up...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | convert to markdown and add some basic installation...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | remove older perl versions, no need to test these
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | add in Debian patches courtesy, courtesy @mr-c and...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | add TODOs for tests, which need more investigation...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | run only if DB_File and other deps are present (and...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | bump RC number
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | kill some warnings temporarily, since these are actually...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | see if we can deal w/ some of the stocastic issues...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | remove other Biblio references; notable XML::Parser...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | get rid of SOAP::Lite req, used only for Bio::Biblio...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | bump version
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | Merge branch 'master' of github.com:bioperl/bioperl...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | fix dist names; the version munging was breaking release...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | Merge branch 'master' of github.com:bioperl/bioperl...
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | Merge branch 'topic/ncbi-https' of github.com:bioperl...
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | fix test count
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | NCBI http -> https
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | flatfile tests failed when compared to entrez tests...
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | Merge branch 'master' of github.com:bioperl/bioperl...
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | skip any enzymes with multiple cut sites with a warning...
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | Merge branch 'master' of github.com:bioperl/bioperl...
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | add documentation to clarify seq() returning revcom...
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | move install docs to markdown
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | add CGI, not in perl core after 5.22
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | fix IO tests using -url to require networking, fixes...
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | remove tests added erroneously
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | add CGI dependency, related to #160
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | remove bogus test; if you give a bad version you should...
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | bump rc version
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | update versioning, re: #87
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | remove redundant versions, #87
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | remove cruft from Build
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | change version to a RC, but this will need to be tested...
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | add CGI as a dependency, no longer in perl core as...
|
commit | commitdiff | tree |
| 2016-06-22 |
Chris Fields | NCBI http -> https
|
commit | commitdiff | tree |
| 2016-06-11 |
Chris Fields | git Bugs link
|
commit | commitdiff | tree |
| 2016-06-05 |
Chris Fields | fix more links per #156; missing Bugs page
|
commit | commitdiff | tree |
| 2016-06-05 |
Chris Fields | fix one link per #156, others still missing
|
commit | commitdiff | tree |
| 2016-06-05 |
Chris Fields | Fix for #154, per @stuartrbaker
|
commit | commitdiff | tree |
| 2016-05-16 |
Chris Fields | Merge pull request #150 from jkeenan/missing_manifest
|
commit | commitdiff | tree |
| 2016-05-16 |
Chris Fields | Merge pull request #149 from lskatz/master
|
commit | commitdiff | tree |
| 2016-04-27 |
Chris Fields | Merge pull request #145 from jogoodma/obodef
|
commit | commitdiff | tree |
| 2016-04-05 |
Chris Fields | Merge pull request #142 from hdevillers/master
|
commit | commitdiff | tree |
| 2016-03-29 |
Chris Fields | Merge pull request #143 from bioperl/issues/131
|
commit | commitdiff | tree |
| 2016-02-20 |
Chris Fields | Merge pull request #138 from sillitoe/master
|
commit | commitdiff | tree |
| 2016-02-04 |
Chris Fields | Merge pull request #128 from dk/master
|
commit | commitdiff | tree |
| 2016-02-04 |
Chris Fields | Merge pull request #79 from Buuntu/master
|
commit | commitdiff | tree |
| 2016-01-27 |
Chris Fields | don't enforce strict line length for FASTA, it's good...
|
commit | commitdiff | tree |
| 2015-10-08 |
Matthieu Muffato | bugfix: make sure there is at least 1 space between...
|
commit | commitdiff | tree |
| 2015-10-08 |
Chris Fields | Merge pull request #91 from nathanweeks/topic/dbi_sqlite_fts
|
commit | commitdiff | tree |
| 2015-10-08 |
Chris Fields | Merge pull request #109 from gantzgraf/patch-1
|
commit | commitdiff | tree |
| 2015-09-17 |
Chris Fields | Merge branch 'merge_root_into_live'
|
commit | commitdiff | tree |
| 2015-05-30 |
Chris Fields | Merge pull request #101 from christiam/master
|
commit | commitdiff | tree |
| 2015-05-30 |
Chris Fields | Merge pull request #104 from douglasgscofield/master
|
commit | commitdiff | tree |
| 2015-04-10 |
Chris Fields | Merge pull request #111 from adsj/master
|
commit | commitdiff | tree |
| 2015-03-29 |
Chris Fields | Need to move the Deobfuscator to a separate directory...
|
commit | commitdiff | tree |
| 2015-03-29 |
Chris Fields | modify RTD URL to point to a common spot, will add...
|
commit | commitdiff | tree |
| 2015-03-29 |
Chris Fields | add readthedocs badge; will gradually start migrating...
|
commit | commitdiff | tree |
| 2015-03-25 |
Chris Fields | even better DOI
|
commit | commitdiff | tree |
| 2015-03-25 |
Chris Fields | add DOI badge from Zenodo
|
commit | commitdiff | tree |
| 2015-03-05 |
Chris Fields | skip tests when using perl < 5.12
|
commit | commitdiff | tree |
| 2015-03-05 |
Chris Fields | Merge branch master of github.com:bioperl/bioperl-live
|
commit | commitdiff | tree |
| 2015-03-05 |
Chris Fields | remove test file
|
commit | commitdiff | tree |
| 2015-03-02 |
Chris Fields | a bit more doc; getting about 1000 full lineage lookups...
|
commit | commitdiff | tree |
| 2015-03-02 |
Chris Fields | small profiling improvement w/index files
|
commit | commitdiff | tree |
| 2015-03-02 |
Chris Fields | bit more docs on todo items
|
commit | commitdiff | tree |
| 2015-03-01 |
Chris Fields | all key tests pass (only a few haven't been checked...
|
commit | commitdiff | tree |
| 2015-03-01 |
Chris Fields | all but two tests passing
|
commit | commitdiff | tree |
| 2015-03-01 |
Chris Fields | trust your DB implementation, particularly if ancestor...
|
commit | commitdiff | tree |
| 2015-03-01 |
Chris Fields | remove pasto
|
commit | commitdiff | tree |
| 2015-03-01 |
Chris Fields | vent
|
commit | commitdiff | tree |
| 2015-03-01 |
Chris Fields | SQLite is has case-insensitive LIKE, no need for lc...
|
commit | commitdiff | tree |
| 2015-03-01 |
Chris Fields | start testing Bio::Taxon
|
commit | commitdiff | tree |
| 2015-03-01 |
Chris Fields | implement get_taxids()
|
commit | commitdiff | tree |
| 2015-02-28 |
Chris Fields | get basic tests, num_taxa test passing
|
commit | commitdiff | tree |
| 2015-02-28 |
Chris Fields | tests (carried over from RemoteDB/Taxonomy.t so has...
|
commit | commitdiff | tree |
