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sync last bits with main trunk
2009-09-17
c
jfiel
d
s
sync
l
a
s
t bits w
i
th main tru
n
k
commit
|
commitdiff
|
tree
2009-09-16
cjfields
bump to
a
lph
a
1
commit
|
commitdiff
|
tree
2009-09-16
cjfield
s
s
ync with
main trunk
commit
|
commitdiff
|
tree
2009-09-15
cjfields
s
y
nc with main trunk compl
e
tely
(
a
few
test
s
failing)
commit
|
commitdiff
|
tree
2009-09-15
cjfields
sync with
trunk (to r15946)
commit
|
commitdiff
|
tree
2009-09-15
cjf
i
eld
s
sync
wi
t
h trunk to
r
15684
commit
|
commitdiff
|
tree
2009-04-14
cj
f
ields
sync
w
/ m
a
in trun
k
commit
|
commitdiff
|
tree
2009-02-05
cjfields
sync wit
h
m
ain t
r
unk HEA
D
commit
|
commitdiff
|
tree
2009-01-24
cjfields
*
revert r15441 for t
h
e time being (
S
eqFeature
.
t t
e
sts
.
.
.
commit
|
commitdiff
|
tree
2009-01-24
cjfiel
d
s
Bump ve
r
sion to 1
.
6 for fin
a
l
r
elease
.
commit
|
commitdiff
|
tree
2009-01-21
cjfields
sync last
co
m
mit
commit
|
commitdiff
|
tree
2009-01-21
cj
f
ield
s
*
s
ync with tru
n
k
commit
|
commitdiff
|
tree
2009-01-21
c
j
f
i
elds
*
s
ync
w
ith trunk
commit
|
commitdiff
|
tree
2009-01-21
cjfields
* delete Bio::DB::
S
eqFeature::Store::DBI
:
:
P
g pe
r
Sc
o
tt
.
.
.
commit
|
commitdiff
|
tree
2009-01-20
cjfields
sync with mai
n
trunk
commit
|
commitdiff
|
tree
2009-01-16
cjfiel
d
s
I
n
c
.
RC ve
r
s
i
on
commit
|
commitdiff
|
tree
2009-01-16
cjfields
carry
o
v
er test fi
x
es from tr
u
n
k
commit
|
commitdiff
|
tree
2009-01-16
cj
f
i
e
l
ds
Carry
o
v
er test change
f
r
om main
trunk
commit
|
commitdiff
|
tree
2009-01-16
cjfields
Sync wi
t
h main trunk
commit
|
commitdiff
|
tree
2009-01-13
cjfiel
d
s
Sync
with
m
ain trunk
commit
|
commitdiff
|
tree
2009-01-13
cjfields
Sync
with main
trunk
commit
|
commitdiff
|
tree
2009-01-06
cjfield
s
Syn
c
with trun
k
.
This w
i
ll appear i
n
fi
n
al release
.
commit
|
commitdiff
|
tree
2009-01-06
c
j
fields
Resolve conflict (can't di
r
ectly merge si
n
ce
t
ru
n
k
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfi
e
lds
Syn
c
t
h
at
last bit
w
i
th tr
u
nk
.
I'll have to
merge
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjf
i
elds
Sync wit
h
t
r
unk
commit
|
commitdiff
|
tree
2009-01-05
cjfields
Bump RC
t
o 2; will tag, b
a
g,
and ship tom
o
rrow
a
fter
.
.
.
commit
|
commitdiff
|
tree
2009-01-05
c
j
fields
Sync
w
ith
trunk
commit
|
commitdiff
|
tree
2009-01-04
cjfields
s
y
n
c
w
i
th trunk
commit
|
commitdiff
|
tree
2009-01-02
cjfi
e
lds
sync from trunk
commit
|
commitdiff
|
tree
2009-01-02
cjfi
e
lds
sync last
commit
commit
|
commitdiff
|
tree
2009-01-02
cjfi
e
lds
sync wi
t
h HEAD
commit
|
commitdiff
|
tree
2009-01-02
cjfi
e
lds
Remove t/Graphics
commit
|
commitdiff
|
tree
2009-01-02
cjfields
Remove Bio::Graphi
c
s examples and scripts
commit
|
commitdiff
|
tree
2008-12-26
cj
f
ields
empty d
i
re
c
t
ory
commit
|
commitdiff
|
tree
2008-12-26
cj
f
i
eld
s
Emp
t
y d
i
r
e
c
t
ory
commit
|
commitdiff
|
tree
2008-12-26
cjf
i
el
d
s
empty
direct
o
ry
commit
|
commitdiff
|
tree
2008-12-26
cjfields
sync with t
r
unk
commit
|
commitdiff
|
tree
2008-12-24
c
j
fields
small cl
a
ri
f
ication
commit
|
commitdiff
|
tree
2008-12-24
c
jfiel
d
s
Add
l
ist of
b
ugs sla
t
ed f
o
r the
1
.
6
.
x seri
e
s
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Updat
e
s for RC1
commit
|
commitdiff
|
tree
2008-12-24
c
j
field
s
r
e
move Microa
r
ray deps
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Small
fix fo
r
t
e
sts
J
IC the
r
e i
s
a
net
w
ork
e
r
r
or
commit
|
commitdiff
|
tree
2008-12-24
cjfield
s
Sync b
r
a
n
ch with trunk
commit
|
commitdiff
|
tree
2008-12-24
cjfie
l
ds
Re
m
ov
e
Bio::Microarray f
r
om b
r
anch (still in
developm
e
nt
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Remove
(merge did
n
't remove
thi
s
for s
o
me reason)
commit
|
commitdiff
|
tree
2008-12-24
cj
f
i
e
lds
Remo
v
e
(merge didn't remove
t
his fo
r
s
o
me reason)
commit
|
commitdiff
|
tree
2008-12-22
cjfields
sync trunk wit
h
br
a
nch
commit
|
commitdiff
|
tree
2008-12-20
cjfields
5
.
6
.
1
is min perl
v
ersion r
e
quired for all core modules no
w
commit
|
commitdiff
|
tree
2008-12-19
cjfields
update NAMES
commit
|
commitdiff
|
tree
2008-12-19
cjfi
e
lds
small typo
commit
|
commitdiff
|
tree
2008-12-18
cjf
i
e
l
ds
t
ypo
commit
|
commitdiff
|
tree
2008-12-18
cjfie
l
ds
[bug 271
4
]
commit
|
commitdiff
|
tree
2008-12-17
cjfields
fix test
n
umber
commit
|
commitdiff
|
tree
2008-12-17
c
j
fiel
d
s
update Test::Wa
r
n
(fixes Qual
.
t
t
e
st problem
s
with
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
missed one
commit
|
commitdiff
|
tree
2008-12-16
c
j
fiel
d
s
E
U
ti
l
ities re
m
ote tests b
a
ck online
(
s
imple t
e
s
t
s only)
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EUtilities remo
t
e tests
b
ack onl
i
ne (simple tests
o
nly
)
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
ds
Y
ou must actually test
da
t
a if you want this module
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
Don't use print! Chang
i
ng to $s
e
lf->debug o
r
commen
t
ing o
u
t
commit
|
commitdiff
|
tree
2008-12-16
cjfields
B
i
o
::Graph deprec
a
ted in 1
.
6
commit
|
commitdiff
|
tree
2008-12-16
c
jf
i
eld
s
stifle warnings w
h
en pa
s
sing string instead of
in
t
eger
commit
|
commitdiff
|
tree
2008-12-16
cjfields
hash ref, n
o
t arr
a
y ref
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
ds
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug
2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfiel
d
s
[bug 2637
]
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
elds
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-15
cj
f
ields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-15
cjfiel
d
s
[
b
u
g 271
2
]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
scores
commit
|
commitdiff
|
tree
2008-12-15
cjfi
e
l
d
s
re
m
aining
t
ests
for Bio::Tool::EUt
i
lities
commit
|
commitdiff
|
tree
2008-12-15
cjfie
l
d
s
m
ore
test data
commit
|
commitdiff
|
tree
2008-12-15
cjfields
Updates:
commit
|
commitdiff
|
tree
2008-12-13
cjfields
initi
a
l b
a
tch of E
U
ti
l
Parameters tests
commit
|
commitdiff
|
tree
2008-12-13
c
j
f
i
elds
einfo test
s
commit
|
commitdiff
|
tree
2008-12-12
cjfields
some
EUtilities tests (parsing
f
rom f
i
les
)
commit
|
commitdiff
|
tree
2008-12-12
cjfield
s
some test data fo
r
Bio::To
o
ls::EUtilities
commit
|
commitdiff
|
tree
2008-12-12
cjfields
upd
a
tes to
E
U
t
ilities (gettin
g
ready for docs,
tests
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
cjfields
Mo
v
e EUtilParame
t
ers to Tools (seems
m
ore appro
p
riate)
commit
|
commitdiff
|
tree
2008-12-11
cjfiel
d
s
fix fo
r
bu
g
when get
t
ing ca
c
h
e
d response
w
ith filename
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cj
f
ields
s
m
all poi
n
ter to wiki page
(
will
update a
l
ong with
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
s
ma
l
l update
commit
|
commitdiff
|
tree
2008-12-11
c
j
fields
updates
commit
|
commitdiff
|
tree
2008-12-11
cjf
i
elds
retu
r
n, n
o
t 're
t
u
r
n undef'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
return, not 'return un
d
ef'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
cjfie
l
d
s
[bu
g
26
9
9]
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 2707]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
Removing from HEA
D
(deprecated for 1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
cj
f
ields
mini po
d
fix
commit
|
commitdiff
|
tree
2008-12-10
cjfields
u
p
da
t
e deprecatio
n
list
commit
|
commitdiff
|
tree
2008-12-10
cjfields
re
m
o
v
e Bio:
:
Graph
i
cs (separate
p
ackag
e
now)
commit
|
commitdiff
|
tree
2008-12-10
c
j
fields
[bug
2637]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
Remove depe
n
dencies for Bio:
:
Graphics and deprecate
d
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
c
j
fields
Squash warning
commit
|
commitdiff
|
tree
2008-12-09
cjfield
s
d
iag() on
l
y
o
n
verbose
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Fix last loop
t
ests, move some
t
o
can_ok
commit
|
commitdiff
|
tree
2008-12-09
cjf
i
el
d
s
Modify
to test new temp
c
la
s
ses and e
n
sure that added
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
upda
t
e Mauricio's em
a
il
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Upda
t
e
Roy's email
commit
|
commitdiff
|
tree
2008-12-08
c
j
fields
Roy's email (
a
n
d
bioperl
.
or
g
not b
i
op
e
rl
.
edu)
commit
|
commitdiff
|
tree
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