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sync last bits with main trunk
2009-09-17
cjfields
s
y
n
c l
a
st bits with m
a
in trunk
commit
|
commitdiff
|
tree
2009-09-16
cjfields
bump t
o
alp
h
a 1
commit
|
commitdiff
|
tree
2009-09-16
c
jfields
sync wit
h
main trunk
commit
|
commitdiff
|
tree
2009-09-15
cjf
i
e
l
ds
sync with main trunk
completely (a few
t
ests
f
a
iling
)
commit
|
commitdiff
|
tree
2009-09-15
cjfields
sync with trunk (to r15946)
commit
|
commitdiff
|
tree
2009-09-15
cjfie
l
ds
sync w
i
t
h
trun
k
to r15
6
84
commit
|
commitdiff
|
tree
2009-04-14
cjfield
s
sync w/ main trunk
commit
|
commitdiff
|
tree
2009-02-05
cjfi
e
lds
sync with
m
ain trunk HEAD
commit
|
commitdiff
|
tree
2009-01-24
cjf
i
elds
* revert r15441
f
o
r th
e
time being
(
SeqFeature
.
t te
s
ts
.
.
.
commit
|
commitdiff
|
tree
2009-01-24
cjfi
e
lds
Bump vers
i
on to 1
.
6 for final release
.
commit
|
commitdiff
|
tree
2009-01-21
cjfields
sync las
t
co
m
mit
commit
|
commitdiff
|
tree
2009-01-21
cjfields
* sync with trunk
commit
|
commitdiff
|
tree
2009-01-21
cjfields
*
sync w
i
th
tr
u
nk
commit
|
commitdiff
|
tree
2009-01-21
c
j
fi
e
ld
s
* delete
Bio
:
:DB::SeqFeature
:
:
S
tore:
:
DBI::Pg p
e
r Scott
.
.
.
commit
|
commitdiff
|
tree
2009-01-20
c
jfields
s
ync with main
trunk
commit
|
commitdiff
|
tree
2009-01-16
cjfield
s
Inc
.
RC version
commit
|
commitdiff
|
tree
2009-01-16
cjfields
c
a
rry over test fixes from trun
k
commit
|
commitdiff
|
tree
2009-01-16
cjfie
l
ds
C
arry
over test change from main trunk
commit
|
commitdiff
|
tree
2009-01-16
c
j
fields
Sync
w
ith main
trunk
commit
|
commitdiff
|
tree
2009-01-13
cjfie
l
ds
Sync w
i
th main tr
u
nk
commit
|
commitdiff
|
tree
2009-01-13
cjfie
l
d
s
Sync with main trun
k
commit
|
commitdiff
|
tree
2009-01-06
cjfields
S
y
nc with t
r
u
nk
.
This w
i
ll appear in fin
a
l release
.
commit
|
commitdiff
|
tree
2009-01-06
cj
f
ie
l
ds
Resolve co
n
f
l
ict (
c
an't dir
e
ctly me
r
ge
since trunk
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfie
l
ds
Sync that las
t
bit with trun
k
.
I'll h
a
ve to merge
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjfields
Sync
w
ith trunk
commit
|
commitdiff
|
tree
2009-01-05
c
j
fiel
d
s
Bump RC
t
o 2; wil
l
tag,
b
ag, an
d
shi
p
t
o
m
o
rrow
a
f
t
er
.
.
.
commit
|
commitdiff
|
tree
2009-01-05
cjfields
Sync with trunk
commit
|
commitdiff
|
tree
2009-01-04
cjfields
sync
w
ith tru
n
k
commit
|
commitdiff
|
tree
2009-01-02
cjfields
sy
n
c from trunk
commit
|
commitdiff
|
tree
2009-01-02
cj
f
ields
sync l
a
st
c
ommit
commit
|
commitdiff
|
tree
2009-01-02
cjfields
sy
n
c with
H
EAD
commit
|
commitdiff
|
tree
2009-01-02
cjfield
s
R
emove
t/Graphics
commit
|
commitdiff
|
tree
2009-01-02
cjfields
Remove Bio::Graphics examples and
scripts
commit
|
commitdiff
|
tree
2008-12-26
cjfields
empt
y
directory
commit
|
commitdiff
|
tree
2008-12-26
cj
f
ields
Empty dire
c
t
o
ry
commit
|
commitdiff
|
tree
2008-12-26
cj
f
i
e
lds
e
mp
t
y
d
i
re
c
t
ory
commit
|
commitdiff
|
tree
2008-12-26
cjfiel
d
s
sync with trunk
commit
|
commitdiff
|
tree
2008-12-24
cj
f
ields
small clar
i
fi
c
a
tion
commit
|
commitdiff
|
tree
2008-12-24
cjfi
e
l
ds
Add li
s
t o
f
bugs
sl
a
ted for th
e
1
.
6
.
x
s
eries
commit
|
commitdiff
|
tree
2008-12-24
cjfie
l
ds
Up
d
at
e
s for RC1
commit
|
commitdiff
|
tree
2008-12-24
cjfields
remove
M
icroarray deps
commit
|
commitdiff
|
tree
2008-12-24
cjfield
s
Smal
l
f
i
x for
test
s
JIC there is a n
e
t
w
ork erro
r
commit
|
commitdiff
|
tree
2008-12-24
c
j
field
s
Syn
c
branch with
trunk
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Remove Bi
o
::Microa
r
r
ay
fro
m
branch (
s
till in de
v
elop
m
ent
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
cjfields
R
e
move (mer
g
e di
d
n't remove this
f
o
r some reason)
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Rem
o
v
e
(merg
e
didn't remov
e
this f
o
r som
e
reason)
commit
|
commitdiff
|
tree
2008-12-22
cjfields
sync trunk with
branch
commit
|
commitdiff
|
tree
2008-12-20
c
j
f
i
e
l
ds
5
.
6
.
1 is min
p
erl version requi
r
ed for all core modu
l
es now
commit
|
commitdiff
|
tree
2008-12-19
c
j
fields
u
pdate
NAME
S
commit
|
commitdiff
|
tree
2008-12-19
c
jf
i
elds
small
typo
commit
|
commitdiff
|
tree
2008-12-18
cjfields
typo
commit
|
commitdiff
|
tree
2008-12-18
cjfie
l
ds
[
b
ug 2714]
commit
|
commitdiff
|
tree
2008-12-17
cjfields
fix t
e
st
n
umb
e
r
commit
|
commitdiff
|
tree
2008-12-17
cjfields
u
pdate T
e
st::Warn (fix
e
s Qual
.
t tes
t
problems
with
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
ds
mi
s
s
e
d on
e
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EUtili
t
ies remote
tests back
o
n
line (simp
l
e t
e
s
t
s o
n
ly)
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EUtilities
r
emote tests
b
a
c
k
online (simple t
e
sts on
l
y)
commit
|
commitdiff
|
tree
2008-12-16
cjfields
You
m
u
s
t
actua
l
ly test dat
a
if you want this module
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ields
Don
'
t use p
r
int!
C
hanging
to
$
self->debug or
c
o
mmentin
g
out
commit
|
commitdiff
|
tree
2008-12-16
c
j
fields
Bio::Graph d
e
pr
e
c
ated in 1
.
6
commit
|
commitdiff
|
tree
2008-12-16
cjfields
stifle warnings when passing
strin
g
instead
o
f integer
commit
|
commitdiff
|
tree
2008-12-16
cjfield
s
h
a
s
h ref, not a
r
ray ref
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
e
l
ds
[bug 263
7
]
commit
|
commitdiff
|
tree
2008-12-16
c
j
fields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 2
6
3
7]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[
b
u
g 2637]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[bug
2
637]
commit
|
commitdiff
|
tree
2008-12-15
cjfie
l
ds
[bug 2712]
commit
|
commitdiff
|
tree
2008-12-15
cjfi
e
l
d
s
sc
o
r
es
commit
|
commitdiff
|
tree
2008-12-15
cjfields
r
e
maining tests for Bio::Tool
:
:EUtilities
commit
|
commitdiff
|
tree
2008-12-15
cj
f
iel
d
s
more te
s
t data
commit
|
commitdiff
|
tree
2008-12-15
cjfields
Updates:
commit
|
commitdiff
|
tree
2008-12-13
cjfields
in
i
tial b
a
tch of E
U
tilPa
r
a
m
eters
t
ests
commit
|
commitdiff
|
tree
2008-12-13
cjfi
e
lds
einfo tests
commit
|
commitdiff
|
tree
2008-12-12
cjfie
l
ds
s
ome EUti
l
ities t
e
sts (pars
i
n
g fr
o
m
f
il
e
s
)
commit
|
commitdiff
|
tree
2008-12-12
cjfields
s
o
me tes
t
data for B
i
o::T
o
ols::EU
t
ilities
commit
|
commitdiff
|
tree
2008-12-12
cjfi
e
lds
updates t
o
EUtilities (
g
etting ready for d
o
cs
,
t
e
sts
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
cjfield
s
Move EUtilParam
e
t
e
rs to Tools
(
seems mo
r
e appropriate)
commit
|
commitdiff
|
tree
2008-12-11
cj
f
i
elds
fix for bug wh
e
n
getting
c
ached response with
f
ilename
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
c
jfields
small p
o
inter to wiki page (will upda
t
e
along wit
h
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjf
i
elds
small
up
d
ate
commit
|
commitdiff
|
tree
2008-12-11
c
jfi
e
l
d
s
updates
commit
|
commitdiff
|
tree
2008-12-11
cjfie
l
ds
re
t
urn, no
t
'return undef
'
commit
|
commitdiff
|
tree
2008-12-11
cjfie
l
d
s
r
e
t
u
rn, not '
r
et
u
rn unde
f
'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
c
j
f
ields
[bug
2707]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
Removing fro
m
HEA
D
(deprecat
e
d for 1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
cjfields
min
i
pod fix
commit
|
commitdiff
|
tree
2008-12-10
cjfields
up
d
ate deprecation list
commit
|
commitdiff
|
tree
2008-12-10
c
j
fields
r
emov
e
B
io::
G
raphics (separate package now)
commit
|
commitdiff
|
tree
2008-12-10
cjf
i
eld
s
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
R
e
m
ov
e
depende
n
cies
for Bi
o
::
G
r
ap
h
ics and dep
r
e
c
a
t
ed
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cj
f
ields
S
q
uash w
a
rning
commit
|
commitdiff
|
tree
2008-12-09
cjfiel
d
s
diag()
o
nly on verbose
commit
|
commitdiff
|
tree
2008-12-09
cjfiel
d
s
F
i
x la
s
t loop
tests, move some
to can_ok
commit
|
commitdiff
|
tree
2008-12-09
cjfie
l
ds
Modify to test new temp classes
and ensu
r
e that adde
d
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
update Mauricio's email
commit
|
commitdiff
|
tree
2008-12-08
cjfield
s
Updat
e
Roy's
e
mail
commit
|
commitdiff
|
tree
2008-12-08
cjfiel
d
s
Roy's
email (and
b
ioperl
.
org not biope
r
l
.
edu)
commit
|
commitdiff
|
tree
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