| 2016-05-16 |
Chris Fields | Merge pull request #149 from lskatz/master
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| 2016-04-27 |
Chris Fields | Merge pull request #145 from jogoodma/obodef
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| 2016-04-05 |
Chris Fields | Merge pull request #142 from hdevillers/master
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| 2016-03-29 |
Chris Fields | Merge pull request #143 from bioperl/issues/131
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| 2016-02-20 |
Chris Fields | Merge pull request #138 from sillitoe/master
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| 2016-02-04 |
Chris Fields | Merge pull request #128 from dk/master
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| 2016-02-04 |
Chris Fields | Merge pull request #79 from Buuntu/master
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| 2016-01-27 |
Chris Fields | don't enforce strict line length for FASTA, it's good...
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| 2015-10-08 |
Matthieu Muffato | bugfix: make sure there is at least 1 space between...
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| 2015-10-08 |
Chris Fields | Merge pull request #91 from nathanweeks/topic/dbi_sqlite_fts
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| 2015-10-08 |
Chris Fields | Merge pull request #109 from gantzgraf/patch-1
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| 2015-09-17 |
Chris Fields | Merge branch 'merge_root_into_live'
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| 2015-05-30 |
Chris Fields | Merge pull request #101 from christiam/master
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| 2015-05-30 |
Chris Fields | Merge pull request #104 from douglasgscofield/master
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| 2015-04-10 |
Chris Fields | Merge pull request #111 from adsj/master
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| 2015-03-29 |
Chris Fields | Need to move the Deobfuscator to a separate directory...
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| 2015-03-29 |
Chris Fields | modify RTD URL to point to a common spot, will add...
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| 2015-03-29 |
Chris Fields | add readthedocs badge; will gradually start migrating...
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| 2015-03-25 |
Chris Fields | even better DOI
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| 2015-03-25 |
Chris Fields | add DOI badge from Zenodo
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| 2015-03-05 |
Chris Fields | skip tests when using perl < 5.12
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| 2015-03-05 |
Chris Fields | Merge branch master of github.com:bioperl/bioperl-live
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| 2015-03-05 |
Chris Fields | remove test file
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| 2015-03-02 |
Chris Fields | a bit more doc; getting about 1000 full lineage lookups...
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| 2015-03-02 |
Chris Fields | small profiling improvement w/index files
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| 2015-03-02 |
Chris Fields | bit more docs on todo items
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| 2015-03-01 |
Chris Fields | all key tests pass (only a few haven't been checked...
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| 2015-03-01 |
Chris Fields | all but two tests passing
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| 2015-03-01 |
Chris Fields | trust your DB implementation, particularly if ancestor...
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| 2015-03-01 |
Chris Fields | remove pasto
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| 2015-03-01 |
Chris Fields | vent
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| 2015-03-01 |
Chris Fields | SQLite is has case-insensitive LIKE, no need for lc...
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| 2015-03-01 |
Chris Fields | start testing Bio::Taxon
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| 2015-03-01 |
Chris Fields | implement get_taxids()
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| 2015-02-28 |
Chris Fields | get basic tests, num_taxa test passing
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| 2015-02-28 |
Chris Fields | tests (carried over from RemoteDB/Taxonomy.t so has...
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| 2015-02-28 |
Chris Fields | init implementation of num_taxa
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| 2015-02-28 |
Chris Fields | commit renamed (but not fully implemented) Bio::DB...
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| 2015-02-25 |
Chris Fields | small test fix for taxonomy woes (stop-gap, need a...
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| 2014-10-29 |
Chris Fields | add latest changes to, um, Changes
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| 2014-10-28 |
Chris Fields | one more for changes
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| 2014-10-28 |
Chris Fields | database name changed
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| 2014-10-28 |
Chris Fields | have to ignore possibly bad cert to get this working...
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commit | commitdiff | tree |
| 2014-10-28 |
Chris Fields | have to ignore possibly bad cert to get this working
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commit | commitdiff | tree |
| 2014-10-28 |
Chris Fields | have to ignore possibly bad cert to get this working
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| 2014-10-28 |
Chris Fields | yep, another flappy test
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commit | commitdiff | tree |
| 2014-10-28 |
Chris Fields | another flappy test
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| 2014-10-28 |
Chris Fields | squash waffling test
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commit | commitdiff | tree |
| 2014-10-28 |
Chris Fields | minor cleanup
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commit | commitdiff | tree |
| 2014-10-28 |
Chris Fields | ad more updates
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| 2014-10-27 |
Chris Fields | remove debugging
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commit | commitdiff | tree |
| 2014-10-27 |
Chris Fields | document minor changes
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| 2014-10-27 |
Chris Fields | bump version; this seems to be caught by latest M:...
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| 2014-10-26 |
Chris Fields | Merge branch 'master' of github.com:bioperl/bioperl...
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| 2014-10-26 |
Chris Fields | no_index means 'do not index any modules nor add them...
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| 2014-10-25 |
Chris Fields | Merge pull request #85 from nyamned/patch-1
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| 2014-10-20 |
Chris Fields | skip these tests if LWP isn't installed
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| 2014-09-14 |
Chris Fields | add 5.20 (may remove 5.10 at some point)
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| 2014-09-14 |
Chris Fields | add the two cyclic ref testers (not required for general...
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| 2014-09-13 |
Chris Fields | fix test count, which fails if optional mem leak modules...
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commit | commitdiff | tree |
| 2014-09-13 |
Chris Fields | Add tests for memory leaks and weaken for Issue #81
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| 2014-08-09 |
Chris Fields | Add travis-ci badge
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| 2014-07-11 |
Chris Fields | spiced_seq() may need LWP
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| 2014-07-10 |
Chris Fields | fix a warning
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commit | commitdiff | tree |
| 2014-06-06 |
Chris Fields | Clean up and move to proper spot
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| 2014-06-06 |
Chris Fields | Add tsibley's work to Changes file
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| 2014-05-27 |
Chris Fields | Revert "Move Build.pm out of Root into an install-specific...
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commit | commitdiff | tree |
| 2014-05-27 |
Chris Fields | Move Build.pm out of Root into an install-specific...
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| 2014-05-23 |
Chris Fields | change default BLAST URL per Scott McGinnis at NCBI
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| 2014-05-15 |
Chris Fields | Add a potential fix for AMPHORA2 newick support; this...
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| 2014-04-21 |
Chris Fields | changes all issue tracking in preparation for switch...
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| 2014-03-29 |
Dave Messina | allowing lines with species label ($seq) without $rest...
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| 2014-03-29 |
Chris Fields | spellink
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| 2013-12-18 |
Chris Fields | skip Bio::ASN1::EntrezGene check (circ dependency fixed...
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| 2013-12-18 |
Chris Fields | [skip ci] add some changes
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| 2013-11-26 |
Chris Fields | Revert "test failing build"
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| 2013-11-26 |
Chris Fields | test failing build
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commit | commitdiff | tree |
| 2013-11-26 |
Chris Fields | test Bio::ASN1::EntrezGene
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commit | commitdiff | tree |
| 2013-11-26 |
Chris Fields | see if we can get travis-ci notifications working
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| 2013-10-17 |
Chris Fields | fix issue with seq_id when set to 0, patch courtesy...
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| 2013-10-14 |
Chris Fields | add support for a stricter standard codon table, for...
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| 2013-10-14 |
Chris Fields | add some additional comments
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| 2013-10-06 |
Chris Fields | fix NCBIHelper bug, vars => ours
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| 2013-10-06 |
Chris Fields | remove and refactor genbank CONTIG code, address part...
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commit | commitdiff | tree |
| 2013-10-05 |
Chris Fields | clean up code
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commit | commitdiff | tree |
| 2013-10-05 |
Chris Fields | add test case for GenBank tests for bug #3448
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| 2013-09-16 |
Chris Fields | change eutil URL
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commit | commitdiff | tree |
| 2013-09-14 |
Chris Fields | update Changes
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commit | commitdiff | tree |
| 2013-09-12 |
Chris Fields | chmod of Build.PL to not be exe
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commit | commitdiff | tree |
| 2013-09-12 |
Chris Fields | update Changes
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| 2013-09-12 |
Chris Fields | some ambiguity issues with this method call for some...
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commit | commitdiff | tree |
| 2013-09-10 |
Chris Fields | skip tests if the cloning class used happens to be...
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commit | commitdiff | tree |
| 2013-09-09 |
Chris Fields | Don't compare floats directly; make range of comparisons...
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commit | commitdiff | tree |
| 2013-09-07 |
Chris Fields | remove multi-declaration warning
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commit | commitdiff | tree |
| 2013-09-07 |
Chris Fields | fix skip miscounts
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| 2013-09-07 |
Chris Fields | remove Bio::ASN1::EntrezGene from tests, this still...
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| 2013-09-04 |
Chris Fields | skip tests if Bio::DB::Sam is present but samtools...
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| 2013-09-03 |
Chris Fields | some more README tweaks
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| 2013-09-03 |
Chris Fields | a few mroe markdown bits
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commit | commitdiff | tree |
| 2013-09-03 |
Chris Fields | create README.md file
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