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Need to move the Deobfuscator to a separate directory, as this collides
2015-03-29
Ch
r
is
F
ields
Ne
e
d to move the
Deobfuscator to a separate directory
.
.
.
commit
|
commitdiff
|
tree
2015-03-29
Chr
i
s Fields
modify RTD URL to point to a common
s
pot, will add
.
.
.
commit
|
commitdiff
|
tree
2015-03-29
Chris Fields
add readthedocs bad
g
e
;
will gradu
a
l
l
y st
a
rt migratin
g
.
.
.
commit
|
commitdiff
|
tree
2015-03-25
Chr
i
s Fields
even better DOI
commit
|
commitdiff
|
tree
2015-03-25
Chris Fi
e
l
ds
add
D
OI badge from Z
e
nod
o
commit
|
commitdiff
|
tree
2015-03-05
Chris
F
ields
sk
i
p
t
ests
w
h
en
u
s
ing per
l
< 5
.
12
commit
|
commitdiff
|
tree
2015-03-05
Chris Fields
Merge
branch master of git
h
ub
.
com:bioperl/biope
r
l
-live
commit
|
commitdiff
|
tree
2015-03-05
Chris
Fie
l
ds
remo
v
e te
s
t file
commit
|
commitdiff
|
tree
2015-03-02
Chris
F
i
elds
a bit more doc; gettin
g
about 1000 full lineage looku
p
s
.
.
.
commit
|
commitdiff
|
tree
2015-03-02
Chris Fields
small pr
o
f
i
lin
g
improvement w/index files
commit
|
commitdiff
|
tree
2015-03-02
Chris Fields
bit more docs
o
n
t
odo it
e
ms
commit
|
commitdiff
|
tree
2015-03-01
Chri
s
Fields
all ke
y
tes
t
s pass (only a few h
a
ven't
b
e
e
n che
c
k
e
d
.
.
.
commit
|
commitdiff
|
tree
2015-03-01
Chris Fie
l
ds
all but two t
e
st
s
passing
commit
|
commitdiff
|
tree
2015-03-01
Chris F
i
el
d
s
trus
t
your DB
i
mpl
e
m
e
n
tation, par
t
icularly if a
n
cestor
.
.
.
commit
|
commitdiff
|
tree
2015-03-01
Chr
i
s Field
s
rem
o
ve pas
t
o
commit
|
commitdiff
|
tree
2015-03-01
Chris Fi
e
lds
vent
commit
|
commitdiff
|
tree
2015-03-01
Chris Fields
S
QLite is
h
as case-insensitive LIKE, no need for lc
.
.
.
commit
|
commitdiff
|
tree
2015-03-01
Chris Fields
sta
r
t t
e
s
ting B
i
o:
:
Taxon
commit
|
commitdiff
|
tree
2015-03-01
Chr
i
s Fields
i
mplement get_taxi
d
s()
commit
|
commitdiff
|
tree
2015-02-28
Chris Fiel
d
s
get ba
s
ic te
s
ts,
n
um_
t
axa test pa
s
sing
commit
|
commitdiff
|
tree
2015-02-28
C
hris Fields
tests (carried over from RemoteDB/
T
axonom
y
.
t so has
.
.
.
commit
|
commitdiff
|
tree
2015-02-28
Chris Fields
init
i
mple
m
entation
o
f num_taxa
commit
|
commitdiff
|
tree
2015-02-28
Chris Fiel
d
s
co
m
mit rena
m
ed (but not fully implemen
t
ed) Bi
o
:
:DB
.
.
.
commit
|
commitdiff
|
tree
2015-02-25
Chris Fields
sm
a
l
l
test fix for tax
o
nomy woes (stop-gap, n
e
e
d
a
.
.
.
commit
|
commitdiff
|
tree
2014-10-29
Chr
i
s Fields
add late
s
t
c
h
a
nges to,
um,
Changes
commit
|
commitdiff
|
tree
2014-10-28
Chris Fields
on
e
mor
e
for chan
g
es
commit
|
commitdiff
|
tree
2014-10-28
Chr
i
s Fields
d
atabase
name
c
hanged
commit
|
commitdiff
|
tree
2014-10-28
Chris
F
ields
have to ignore
p
ossibly
b
ad cert
t
o get this wor
k
i
ng
.
.
.
commit
|
commitdiff
|
tree
2014-10-28
Chris Fie
l
ds
have to
i
gnore possibly bad cert to get thi
s
working
commit
|
commitdiff
|
tree
2014-10-28
Chris Fields
have to
ignore
possibly b
a
d cert to
get this
w
orking
commit
|
commitdiff
|
tree
2014-10-28
Chr
i
s Fi
e
lds
ye
p
,
another
f
lappy t
e
s
t
commit
|
commitdiff
|
tree
2014-10-28
Chr
i
s
Fields
a
nother flappy test
commit
|
commitdiff
|
tree
2014-10-28
C
h
ris Fields
squash waffling
test
commit
|
commitdiff
|
tree
2014-10-28
Ch
r
is Fields
m
inor
cleanup
commit
|
commitdiff
|
tree
2014-10-28
Chris
Fields
a
d more up
d
a
t
e
s
commit
|
commitdiff
|
tree
2014-10-27
C
hris Fields
remove de
b
u
gg
i
n
g
commit
|
commitdiff
|
tree
2014-10-27
Chris
Fields
document
m
i
nor changes
commit
|
commitdiff
|
tree
2014-10-27
Chri
s
Fi
e
lds
bump version; this
s
e
ems to b
e
caught
b
y latest M
:
.
.
.
commit
|
commitdiff
|
tree
2014-10-26
Chris Fi
e
l
d
s
Mer
g
e branch 'm
a
st
e
r' o
f
github
.
com:bioperl/bioperl
.
.
.
commit
|
commitdiff
|
tree
2014-10-26
Chris
F
i
elds
no_i
n
dex mean
s
'do not index any
mo
d
ules nor add them
.
.
.
commit
|
commitdiff
|
tree
2014-10-20
Chris Fields
skip these
t
es
t
s
if LWP isn't installed
commit
|
commitdiff
|
tree
2014-09-14
Chris Fields
a
dd 5
.
20 (may remove 5
.
1
0
a
t
some p
o
int)
commit
|
commitdiff
|
tree
2014-09-14
C
h
ri
s
Fi
e
lds
ad
d
the two
c
yclic ref
tes
t
ers (
n
ot required
f
o
r
gen
e
ral
.
.
.
commit
|
commitdiff
|
tree
2014-09-13
Chris Fie
l
ds
fix test count, w
h
ich fa
i
ls
i
f option
a
l mem leak modu
l
es
.
.
.
commit
|
commitdiff
|
tree
2014-09-13
Chris Field
s
Add tes
t
s for memory leaks
an
d
weaken
for Issue #81
commit
|
commitdiff
|
tree
2014-08-09
C
h
ris Fields
Ad
d
travis
-
ci badg
e
commit
|
commitdiff
|
tree
2014-07-11
Chris F
i
elds
s
p
iced_seq() ma
y
nee
d
LWP
commit
|
commitdiff
|
tree
2014-07-10
Chris Fiel
d
s
fix
a
warning
commit
|
commitdiff
|
tree
2013-08-09
Chris Fields
Me
r
ge p
u
ll request #60 from MattOates/master
commit
|
commitdiff
|
tree
2012-08-24
C
hris Fields
Merge pu
l
l
request #3
9
from daisieh/bug3331
commit
|
commitdiff
|
tree
2012-08-24
C
hris Fields
Merg
e
pull
r
e
quest #40 fr
o
m
cwittmer/m
a
s
t
er
commit
|
commitdiff
|
tree
