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validation script for whitehead markers where there appears to be cruft giving 2...
2001-07-05
jason
val
i
dation scr
i
pt for
whitehead m
a
r
k
er
s
whe
r
e there
.
.
.
commit
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commitdiff
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tree
2001-06-21
j
ason
load genemap99 mar
k
ers
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commitdiff
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tree
2001-06-21
jas
o
n
a
d
d
ed -on
l
ine
f
lag, -debug flag
commit
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commitdiff
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tree
2001-06-21
jason
more det
a
iled
d
ebugging ou
t
p
u
t
commit
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commitdiff
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tree
2001-06-21
jason
han
d
le addi
n
g
duplicate markers
bette
r
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commitdiff
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tree
2001-06-21
ja
s
on
work for ge
n
ema
p
99 now
commit
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commitdiff
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tree
2001-06-21
jason
named keys an
d
corrected name of map
commit
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commitdiff
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tree
2001-06-20
jason
cruf
t
b
eg
o
n
e!
commit
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commitdiff
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tree
2001-06-20
jason
remove
c
ruft
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commitdiff
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tree
2001-06-20
j
ason
automagic dow
n
load
i
ng of all the necessar
y
data
s
ets
.
.
.
commit
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commitdiff
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tree
2001-06-20
jason
added m
u
cho
co
m
ments and de
s
criptions
a
bout the different
.
.
.
commit
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commitdiff
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tree
2001-06-19
j
ason
initial commit of scrip
t
to lo
a
d geneth
o
n marke
r
s and
.
.
.
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commitdiff
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tree
2001-06-19
jaso
n
update
a
lg correction
commit
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commitdiff
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tree
2001-06-19
jason
more tests for mark
e
r
s, fi
n
ding by
primers
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commitdiff
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tree
2001-06-19
jason
h
andl
e
up
d
ates better
a
nd allow searching by pri
m
e
rs
commit
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commitdiff
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tree
2001-06-19
jason
h
andle updates and auto-fin
d
markers based
on primers
commit
|
commitdiff
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tree
2001-06-19
jason
proper perl 5
.
6
.
0 s
y
ntax for arrays
commit
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commitdiff
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tree
2001-06-19
jason
c
ode
c
leanup to call get_next_marke
r
proper
l
y
commit
|
commitdiff
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tree
2001-06-19
j
as
o
n
co
d
e for get_next_marker
commit
|
commitdiff
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tree
2001-06-19
j
a
son
c
l
ean
u
p af
t
e
r
a populating t
e
mpor
a
ry ta
b
l
e
commit
|
commitdiff
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tree
2001-06-19
jas
o
n
tes
t
s for get
_
mark
e
rs_for
_
r
egion and get_next_marker
commit
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commitdiff
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tree
2001-06-19
ja
s
o
n
pro
p
er array test - er
r
ant ','
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|
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tree
2001-06-19
j
a
son
updated to reflect
schema changes
commit
|
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tree
2001-06-19
jason
initial script to load whitehead sts markers
commit
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tree
2001-06-19
j
ason
bug clea
n
up
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|
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tree
2001-06-19
j
a
so
n
more tests for mark
e
r ob
j
ect
commit
|
commitdiff
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tree
2001-06-19
j
a
s
on
handle new name of sql file
commit
|
commitdiff
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tree
2001-06-19
j
a
son
rem
o
ve old version
commit
|
commitdiff
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tree
2001-06-19
jason
l
e
t's go ahead and lab
e
l t
h
is with db specific n
a
me
commit
|
commitdiff
|
tree
2001-06-19
jason
aliases are assoc
i
ated
w
ith src rather
t
h
an a m
a
p
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|
commitdiff
|
tree
2001-06-18
jason
missing t
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|
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tree
2001-06-18
jason
warn not chrom, bad ty
p
o
commit
|
commitdiff
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tree
2001-06-18
jaso
n
a
dd
e
d init
i
al m
o
del of t
h
e
m
aps o
b
j
e
cts
,
Lincol
n
to
.
.
.
commit
|
commitdiff
|
tree
2001-06-13
ja
s
on
allow pcrprimers/length to be
n
ull
s
o that we
c
an
s
tore
.
.
.
commit
|
commitdiff
|
tree
2001-06-13
jason
smarted script onl
y
r
e
ads in huge STS file
commit
|
commitdiff
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tree
2001-06-13
jason
support for writi
n
g ePCR db
s
from mys
q
l
d
b
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|
commitdiff
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tree
2001-06-13
jason
pro
t
e
c
t fie
l
d lookup b
e
tt
e
r in 'update' mode
commit
|
commitdiff
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tree
2001-06-13
jason
added a debugging method to_strin
g
commit
|
commitdiff
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tree
2001-06-13
jas
o
n
API change from get_M
a
p/Marker to get
commit
|
commitdiff
|
tree
2001-06-13
jason
upd
a
t
e
d tests to use co
r
rect API
commit
|
commitdiff
|
tree
2001-06-13
jason
sc
r
ipt to import marshfield map
commit
|
commitdiff
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tree
2001-06-09
j
ason
perl 5
.
00503 compliance
commit
|
commitdiff
|
tree
2001-06-08
jaso
n
Ch
r
om len
g
t
h
for a map
q
ueri
a
b
l
e
commit
|
commitdiff
|
tree
2001-06-08
jason
a
d
apt
o
rs w
o
rk
m
ore corr
e
ctly now
commit
|
commitdiff
|
tree
2001-06-08
jason
allow
d
yn
a
mi
c
selection o
f
which dbs we
wil
l
tes
t
commit
|
commitdiff
|
tree
2001-06-06
jason
mark
e
r adaptor a
n
d map ad
a
ptor star
t
ed, not
f
u
ncti
o
nal
commit
|
commitdiff
|
tree
2001-06-06
j
a
son
minor twe
a
ks
commit
|
commitdiff
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tree
2001-06-04
j
aso
n
removing
e
nse
m
bllite c
r
uft
commit
|
commitdiff
|
tree
2001-04-16
jason
cl
e
anup c
r
eated g
b
t
e
mpfil
e
commit
|
commitdiff
|
tree
2001-04-16
jason
ad
d
ed
missing swiss
.
dat and an ex
a
mp
l
e conf scr
i
p
t
commit
|
commitdiff
|
tree
2000-07-27
jas
o
n
revised to ha
n
dle new
ensemb
l
s
c
hema
commit
|
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2000-07-27
j
ason
accounte
d
for new
ensem
b
l schema
commit
|
commitdiff
|
tree
2000-07-27
jason
added TODO file
commit
|
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2000-07-27
jaso
n
en
s
embl-l
i
te now really work
s
with an
e
nsembl db with
.
.
.
commit
|
commitdiff
|
tree
2000-07-14
jason
comment
e
d #'s
commit
|
commitdiff
|
tree
2000-07-14
ja
s
o
n
re
m
ov
e
should
w
o
rk n
o
w
commit
|
commitdiff
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tree
2000-07-14
j
ason
init
i
al
En
s
emb
l
lite commit
commit
|
commitdiff
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tree
2000-07-11
jason
in
i
t
ial sq
l
commit
commit
|
commitdiff
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tree
2000-07-11
jason
initial commi
t
commit
|
commitdiff
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tree