cls.asd

   1 ;;  -*- mode: lisp -*-
   2 ;;; Time-stamp: <2010-02-13 15:24:47 tony>
   3 ;;; Created:    <2005-05-30 17:09:47 blindglobe>
   4 ;;; File:       cls.asd
   5 ;;; Author:     AJ Rossini <blindglobe@gmail.com>
   6 ;;; Copyright:  (c) 2005--2010, by AJ Rossini <blindglobe@gmail.com>
   7 ;;; License:    MIT, see the file LICENSE.mit in this directory for details.
   8 ;;; Purpose:    ASDF specification for Common Lisp Statistics
   9
  10 ;;; What is this talk of 'release'? Klingons do not make software
  11 ;;; 'releases'.  Our software 'escapes', leaving a bloody trail of
  12 ;;; designers and quality assurance people in its wake.
  13
  14 ;; Load ASDF if it isn't loaded
  15 #-asdf(load (pathname (concatenate 'string (namestring *cls-external-dir*) "asdf")))
  16
  17 (in-package :cl-user)
  18
  19 ;;(pushnew *cls-asdf-dir* asdf:*central-registry*)
  20 ;;(pushnew #p"C:/Lisp/libs/" asdf-util:*source-dirs* :test #'equal) ; eg for Microsoft
  21
  22 (cl:defpackage #:cls-system
  23     (:use :common-lisp :asdf))
  24
  25 (in-package #:cls-system)
  26
  27 ;;; To avoid renaming everything from *.lsp to *.lisp...
  28 ;;; borrowed from Cyrus Harmon's work, for example for the ch-util.
  29 ;;; NOT secure against serving multiple architectures/hardwares from
  30 ;;; the same file system (i.e. PPC and x86 would not be
  31 ;;; differentiated).
  32
  33 (defclass cls-lsp-source-file (cl-source-file) ())
  34 (defparameter *fasl-directory*
  35    (make-pathname :directory '(:relative
  36                                #+sbcl "fasl-sbcl"
  37                                #+openmcl "fasl-ccl"
  38                                #+openmcl "fasl-ccl"
  39                                #+cmu "fasl-cmucl"
  40                                #+clisp "fasl-clisp"
  41                                #-(or sbcl openmcl clisp cmucl) "fasl"
  42                                )))
  43
  44
  45 ;;; Handle Luke's *.lsp suffix
  46 (defmethod source-file-type ((c cls-lsp-source-file) (s module)) "lsp")
  47 (defmethod asdf::output-files :around ((operation compile-op)
  48                                        (c cls-lsp-source-file))
  49   (list (merge-pathnames *fasl-directory*
  50                          (compile-file-pathname (component-pathname c)))))
  51 ;;; again, thanks to Cyrus for saving me time...
  52
  53
  54 (defsystem "cls"
  55   :version #.(with-open-file
  56                  (vers (merge-pathnames "version.lisp-expr" *load-truename*))
  57                (read vers))
  58   :author "A.J. Rossini <blindglobe@gmail.com>"
  59   :license "BSD"
  60   :description "Common Lisp Statistics (CLS): A System for Statistical
  61   Computing with Common Lisp; based on Common LispStat (CLS alpha1) by
  62   Luke Tierney <luke@stat.uiowa.edu> (apparently originally written
  63   when Luke was at CMU, on leave at Bell Labs?).  Last touched by him
  64   in 1991, then by AJR starting in 2005."
  65   :serial t
  66   :depends-on (:cffi
  67                :xarray
  68                :lisp-matrix ; on fnv, cl-blapack, ffa
  69                :listoflist
  70                :lift
  71                :rsm-string
  72                ;;      :cl-random ;; or cl-variates, or...?
  73                ;; :cl-cairo2  :cl-2d
  74                )
  75   :components ((:static-file "version" :pathname #p"version.lisp-expr")
  76                (:static-file "LICENSE.mit")
  77                (:static-file "README")
  78
  79                (:module
  80                 "packaging"
  81                 :pathname #p"src/"
  82                 :components
  83                 ((:file "packages")
  84                  (:file "config")))
  85
  86                (:module
  87                 "proto-objects"
  88                 :pathname "src/objsys/"
  89                 :serial t
  90                 :depends-on ("packaging")
  91                 :components
  92                 ((:cls-lsp-source-file "lsobjects")))
  93
  94                (:module "cls-core"
  95                         :pathname "src/basics/"
  96                         :serial t
  97                         :depends-on ("packaging" "proto-objects")
  98                         :components
  99                         ((:cls-lsp-source-file "lstypes")
 100                          (:cls-lsp-source-file "lsfloat")
 101
 102                          (:cls-lsp-source-file "compound")
 103                          (:cls-lsp-source-file "lsmacros"
 104                                                     :depends-on ("compound"))
 105
 106                          (:cls-lsp-source-file "lsmath"
 107                                                     :depends-on ("compound"
 108                                                                  "lsmacros"
 109                                                                  "lsfloat"))))
 110
 111                (:module
 112                 "numerics-internal"
 113                 :pathname "src/numerics/"
 114                 :depends-on ("packaging" "proto-objects" "cls-core")
 115                 :components
 116                 ((:cls-lsp-source-file "cffiglue")
 117                  (:cls-lsp-source-file "dists"
 118                                             :depends-on ("cffiglue"))
 119 #|
 120                  (:cls-lsp-source-file "matrices"
 121                                             :depends-on ("cffiglue"))
 122                  (:cls-lsp-source-file "ladata"
 123                                             :depends-on ("cffiglue"
 124                                                          "matrices"))
 125                  (:file "linalg"
 126                         :depends-on ("cffiglue"
 127                                      "matrices"
 128                                      "ladata"))
 129 |#
 130                  ))
 131
 132
 133                ;; Dataframes and statistical structures.
 134                (:module
 135                 "stat-data"
 136                 :pathname "src/data/"
 137                 :depends-on ("packaging"
 138                              "proto-objects"
 139                              "cls-core"
 140                              "numerics-internal")
 141                 :components
 142                 ((:file "dataframe")
 143                  (:file "dataframe-array")
 144                  (:file "dataframe-matrixlike")
 145                  (:file "dataframe-listoflist")
 146                  (:file "data")
 147                  (:file "data-xls-compat")
 148                  (:file "import")))
 149
 150                (:module
 151                 "cls-basics"
 152                 :pathname "src/basics/"
 153                 :depends-on ("packaging"
 154                              "proto-objects"
 155                              "cls-core"
 156                              "numerics-internal"
 157                              "stat-data")
 158                 :components
 159                 ((:cls-lsp-source-file "lsbasics")))
 160
 161
 162
 163                (:module
 164                 "descriptives"
 165                 :pathname "src/describe/"
 166                 :depends-on ("packaging"
 167                              "proto-objects"
 168                              "cls-core"
 169                              "numerics-internal"
 170                              "stat-data"
 171                              "cls-basics")
 172                 :components
 173                 ((:cls-lsp-source-file "statistics")))
 174 #|
 175                (:module
 176                 "visualize"
 177                 :pathname "src/visualize/"
 178                 :depends-on ("cls-core")
 179                 :components
 180                 ((:file "plot")))
 181 |#
 182                (:module
 183                 "optimization"
 184                 :pathname "src/numerics/"
 185                 :depends-on ("packaging"
 186                              "proto-objects"
 187                              "cls-core"
 188                              "numerics-internal"
 189                              "stat-data"
 190                              "cls-basics")
 191                 :components
 192                 ((:file "optimize")))
 193
 194
 195                ;; Applications
 196                (:module
 197                 "stat-models"
 198                 :pathname "src/stat-models/"
 199                 :depends-on ("packaging"
 200                              "proto-objects"
 201                              "cls-core"
 202                              "numerics-internal"
 203                              "cls-basics"
 204                              "descriptives"
 205                              "optimization")
 206                 :components
 207                 ((:file "regression")
 208                  ;; (:cls-lsp-source-file "nonlin"
 209                  ;;       :depends-on ("regression"))
 210                  ;; (:cls-lsp-source-file "bayes"
 211                  ;;       :depends-on ("regression"))
 212                  ))
 213
 214                ;; Applications
 215                (:module
 216                 "example-data"
 217                 :pathname "Data/"
 218                 :depends-on ("packaging"
 219                              "proto-objects"
 220                              "cls-core"
 221                              "numerics-internal"
 222                              "cls-basics"
 223                              "descriptives"
 224                              "optimization")
 225                 :components
 226                 ((:file "examples")
 227                  (:cls-lsp-source-file "absorbtion")
 228                  (:cls-lsp-source-file "diabetes")
 229                  (:cls-lsp-source-file "leukemia")
 230                  (:cls-lsp-source-file "randu")
 231                  (:cls-lsp-source-file "aircraft")
 232                  (:cls-lsp-source-file "metabolism")
 233                  (:cls-lsp-source-file "book")
 234                  (:cls-lsp-source-file "heating")
 235                  (:cls-lsp-source-file "oxygen")
 236                  (:cls-lsp-source-file "stackloss")
 237                  (:cls-lsp-source-file "car-prices")
 238                  (:cls-lsp-source-file "iris")
 239                  (:cls-lsp-source-file "puromycin")
 240                  (:cls-lsp-source-file "tutorial")))
 241
 242                (:module
 243                  "lisp-stat-unittest"
 244                 :depends-on  ("packaging" "proto-objects"
 245                               "cls-core"
 246                               "numerics-internal"
 247                               "stat-data"
 248                               "cls-basics"
 249                               "descriptives"
 250                               "optimization"
 251                               "stat-models"
 252                               "example-data")
 253                  :pathname "src/unittests/"
 254                  :components ((:file "unittests")
 255                               (:file "unittests-lstypes" :depends-on ("unittests"))
 256                               (:file "unittests-specfn" :depends-on ("unittests"))
 257                               (:file "unittests-prob" :depends-on ("unittests"))
 258                               (:file "unittests-proto" :depends-on ("unittests"))
 259                               (:file "unittests-regression" :depends-on ("unittests"))
 260                               (:file "unittests-listoflist" :depends-on ("unittests"))
 261                               (:file "unittests-arrays" :depends-on ("unittests"))
 262                               (:file "unittests-dataframe" :depends-on ("unittests"))))))
 263
 264 #|
 265  (defmethod perform ((o test-op) (c (eql (find-system :cls))))
 266     (describe (lift:run-tests :suite 'lisp-stat-unittests::lisp-stat-ut)))
 267 |#