cls.asd

   1 ;;  -*- mode: lisp -*-
   2 ;;; Time-stamp: <2009-12-13 17:51:37 tony>
   3 ;;; Created:    <2005-05-30 17:09:47 blindglobe>
   4 ;;; File:       cls.asd
   5 ;;; Author:     AJ Rossini <blindglobe@gmail.com>
   6 ;;; Copyright:  (c) 2005--2008, by AJ Rossini <blindglobe@gmail.com>
   7 ;;; License:    BSD, see the top level directory file LICENSE for details.
   8 ;;; Purpose:    ASDF packaging for CommonLisp Stat
   9
  10 ;;; What is this talk of 'release'? Klingons do not make software
  11 ;;; 'releases'.  Our software 'escapes', leaving a bloody trail of
  12 ;;; designers and quality assurance people in its wake.
  13
  14 (in-package :cl-user)
  15
  16 (defpackage :lisp-stat-config
  17   (:use :common-lisp)
  18   (:export *default-path*
  19            *lsos-files* *basic-files* *ls-files*
  20            *cls-home-dir* *cls-data-dir* *cls-examples-dir*))
  21
  22 (in-package :lisp-stat-config)
  23
  24 (defparameter *cls-home-dir*
  25   (directory-namestring
  26    (truename (asdf:system-definition-pathname :cls)))
  27   "Value considered \"home\" for our data")
  28
  29 (macrolet ((ls-dir (root-str)
  30              `(pathname (concatenate 'string
  31                                      (namestring *cls-home-dir*) ,root-str)))
  32
  33            (ls-defdir (target-dir-var  root-str)
  34              `(defvar ,target-dir-var (ls-dir ,root-str))))
  35
  36   ;; reminder of testing
  37   ;;(macroexpand '(ls-defdir *cls-asdf-dir* "ASDF"))
  38   ;;(macroexpand-1 '(ls-defdir *cls-asdf-dir* "ASDF"))
  39   ;;(macroexpand-1 '(ls-dir "ASDF"))
  40
  41   (ls-defdir *cls-asdf-dir* "ASDF/")
  42   (ls-defdir *cls-data-dir* "Data/")
  43   (ls-defdir *cls-external-dir* "external/"))
  44
  45 ;;(pushnew *cls-asdf-dir* asdf:*central-registry*)
  46
  47 ;; (pushnew #p"C:/Lisp/libs/" asdf-util:*source-dirs* :test #'equal) ; eg for Microsoft
  48
  49 (in-package :cl-user)
  50
  51 (defpackage #:cls-system
  52     (:use :common-lisp :asdf))
  53
  54 (in-package #:cls-system)
  55
  56 ;;; To avoid renaming everything from *.lsp to *.lisp...
  57 ;;; borrowed from Cyrus Harmon's work, for example for the ch-util.
  58 ;;; NOT secure against serving multiple architectures/hardwares from
  59 ;;; the same file system (i.e. PPC and x86 would not be
  60 ;;; differentiated).
  61
  62 (defclass cls-lsp-source-file (cl-source-file) ())
  63 (defparameter *fasl-directory*
  64    (make-pathname :directory '(:relative
  65                                #+sbcl "fasl-sbcl"
  66                                #+openmcl "fasl-ccl"
  67                                #+openmcl "fasl-ccl"
  68                                #+cmu "fasl-cmucl"
  69                                #+clisp "fasl-clisp"
  70                                #-(or sbcl openmcl clisp cmucl) "fasl"
  71                                )))
  72
  73
  74 ;;; Handle Luke's *.lsp suffix
  75 (defmethod source-file-type ((c cls-lsp-source-file) (s module)) "lsp")
  76 (defmethod asdf::output-files :around ((operation compile-op)
  77                                        (c cls-lsp-source-file))
  78   (list (merge-pathnames *fasl-directory*
  79                          (compile-file-pathname (component-pathname c)))))
  80 ;;; again, thanks to Cyrus for saving me time...
  81
  82
  83 (defsystem "cls"
  84   :version #.(with-open-file
  85                  (vers (merge-pathnames "version.lisp-expr" *load-truename*))
  86                (read vers))
  87   :author "A.J. Rossini <blindglobe@gmail.com>"
  88   :license "BSD"
  89   :description "Common Lisp Statistics (CLS): A System for Statistical
  90   Computing with Common Lisp; based on Common LispStat (CLS alpha1) by
  91   Luke Tierney <luke@stat.uiowa.edu> (apparently originally written
  92   when Luke was at CMU, on leave at Bell Labs?).  Last touched by him
  93   in 1991, then by AJR starting in 2005."
  94   :serial t
  95   :depends-on (:cffi
  96                :xarray
  97                :lisp-matrix ; on fnv, cl-blapack, ffa
  98                :listoflist
  99                :lift
 100                :rsm-string
 101                ;;    :cl-cairo2  :cl-2d
 102                )
 103   :components ((:static-file "version" :pathname #p"version.lisp-expr")
 104                (:static-file "LICENSE")
 105                (:static-file "README")
 106
 107                (:module
 108                 "packaging"
 109                 :pathname #p"src/"
 110                 :components
 111                 ((:file "packages")))
 112
 113                (:module
 114                 "proto-objects"
 115                 :pathname "src/objsys/"
 116                 :serial t
 117                 :depends-on ("packaging")
 118                 :components
 119                 ((:cls-lsp-source-file "lsobjects")))
 120
 121                (:module "cls-core"
 122                         :pathname "src/basics/"
 123                         :serial t
 124                         :depends-on ("packaging" "proto-objects")
 125                         :components
 126                         (;(:cls-lsp-source-file "defsys") ; XLS compat?
 127                          (:cls-lsp-source-file "lstypes")
 128                          (:cls-lsp-source-file "lsfloat")
 129
 130                          (:cls-lsp-source-file "compound")
 131                          (:cls-lsp-source-file "lsmacros"
 132                                                     :depends-on ("compound"))
 133
 134                          (:cls-lsp-source-file "lsmath"
 135                                                     :depends-on ("compound"
 136                                                                  "lsmacros"
 137                                                                  "lsfloat"))))
 138
 139                (:module
 140                 "numerics-internal"
 141                 :pathname "src/numerics/"
 142                 :depends-on ("packaging" "proto-objects" "cls-core")
 143                 :components
 144                 ((:cls-lsp-source-file "cffiglue")
 145                  (:cls-lsp-source-file "dists"
 146                                             :depends-on ("cffiglue"))
 147 #|
 148                  (:cls-lsp-source-file "matrices"
 149                                             :depends-on ("cffiglue"))
 150                  (:cls-lsp-source-file "ladata"
 151                                             :depends-on ("cffiglue"
 152                                                          "matrices"))
 153                  (:file "linalg"
 154                         :depends-on ("cffiglue"
 155                                      "matrices"
 156                                      "ladata"))
 157 |#
 158                  ))
 159
 160
 161                ;; Dataframes and statistical structures.
 162                (:module
 163                 "stat-data"
 164                 :pathname "src/data/"
 165                 :depends-on ("packaging"
 166                              "proto-objects"
 167                              "cls-core"
 168                              "numerics-internal")
 169                 :components
 170                 ((:file "dataframe")
 171                  (:file "dataframe-array")
 172                  (:file "dataframe-matrixlike")
 173                  (:file "dataframe-listoflist")
 174                  (:file "data")
 175                  (:file "data-xls-compat")
 176                  (:file "import")
 177                  ;;(:file "listoflist")
 178                  ))
 179
 180                (:module
 181                 "cls-basics"
 182                 :pathname "src/basics/"
 183                 :depends-on ("packaging"
 184                              "proto-objects"
 185                              "cls-core"
 186                              "numerics-internal"
 187                              "stat-data")
 188                 :components
 189                 ((:cls-lsp-source-file "lsbasics")))
 190
 191
 192
 193                (:module
 194                 "descriptives"
 195                 :pathname "src/describe/"
 196                 :depends-on ("packaging"
 197                              "proto-objects"
 198                              "cls-core"
 199                              "numerics-internal"
 200                              "stat-data"
 201                              "cls-basics")
 202                 :components
 203                 ((:cls-lsp-source-file "statistics")))
 204 #|
 205                (:module
 206                 "visualize"
 207                 :pathname "src/visualize/"
 208                 :depends-on ("cls-core")
 209                 :components
 210                 ((:file "plot")))
 211 |#
 212                (:module
 213                 "optimization"
 214                 :pathname "src/numerics/"
 215                 :depends-on ("packaging"
 216                              "proto-objects"
 217                              "cls-core"
 218                              "numerics-internal"
 219                              "stat-data"
 220                              "cls-basics")
 221                 :components
 222                 ((:file "optimize")))
 223
 224
 225                ;; Applications
 226                (:module
 227                 "stat-models"
 228                 :pathname "src/stat-models/"
 229                 :depends-on ("packaging"
 230                              "proto-objects"
 231                              "cls-core"
 232                              "numerics-internal"
 233                              "cls-basics"
 234                              "descriptives"
 235                              "optimization")
 236                 :components
 237                 ((:file "regression")
 238                  ;; (:cls-lsp-source-file "nonlin"
 239                  ;;       :depends-on ("regression"))
 240                  ;; (:cls-lsp-source-file "bayes"
 241                  ;;       :depends-on ("regression"))
 242                  ))
 243
 244                ;; Applications
 245                (:module
 246                 "example-data"
 247                 :pathname "Data/"
 248                 :depends-on ("packaging"
 249                              "proto-objects"
 250                              "cls-core"
 251                              "numerics-internal"
 252                              "cls-basics"
 253                              "descriptives"
 254                              "optimization")
 255                 :components
 256                 ((:file "examples")
 257                  (:cls-lsp-source-file "absorbtion")
 258                  (:cls-lsp-source-file "diabetes")
 259                  (:cls-lsp-source-file "leukemia")
 260                  (:cls-lsp-source-file "randu")
 261                  (:cls-lsp-source-file "aircraft")
 262                  (:cls-lsp-source-file "metabolism")
 263                  (:cls-lsp-source-file "book")
 264                  (:cls-lsp-source-file "heating")
 265                  (:cls-lsp-source-file "oxygen")
 266                  (:cls-lsp-source-file "stackloss")
 267                  (:cls-lsp-source-file "car-prices")
 268                  (:cls-lsp-source-file "iris")
 269                  (:cls-lsp-source-file "puromycin")
 270                  (:cls-lsp-source-file "tutorial")))
 271
 272                (:module
 273                  "lisp-stat-unittest"
 274                 :depends-on  ("packaging" "proto-objects"
 275                               "cls-core"
 276                               "numerics-internal"
 277                               "stat-data"
 278                               "cls-basics"
 279                               "descriptives"
 280                               "optimization"
 281                               "stat-models"
 282                               "example-data")
 283                  :pathname "src/unittests/"
 284                  :components ((:file "unittests")
 285                               (:file "unittests-lstypes" :depends-on ("unittests"))
 286                               (:file "unittests-specfn" :depends-on ("unittests"))
 287                               (:file "unittests-prob" :depends-on ("unittests"))
 288                               (:file "unittests-proto" :depends-on ("unittests"))
 289                               (:file "unittests-regression" :depends-on ("unittests"))
 290                               (:file "unittests-listoflist" :depends-on ("unittests"))
 291                               (:file "unittests-arrays" :depends-on ("unittests"))
 292                               (:file "unittests-dataframe" :depends-on ("unittests"))))))