cls.asd

   1 ;;  -*- mode: lisp -*-
   2 ;;; Time-stamp: <2009-10-02 09:00:12 tony>
   3 ;;; Created:    <2005-05-30 17:09:47 blindglobe>
   4 ;;; File:       cls.asd
   5 ;;; Author:     AJ Rossini <blindglobe@gmail.com>
   6 ;;; Copyright:  (c) 2005--2008, by AJ Rossini <blindglobe@gmail.com>
   7 ;;; License:    BSD, see the top level directory file LICENSE for details.
   8 ;;; Purpose:    ASDF packaging for CommonLisp Stat
   9
  10 ;;; What is this talk of 'release'? Klingons do not make software
  11 ;;; 'releases'.  Our software 'escapes', leaving a bloody trail of
  12 ;;; designers and quality assurance people in its wake.
  13
  14 (in-package :cl-user)
  15
  16 (defpackage :lisp-stat-config
  17   (:use :common-lisp)
  18   (:export *default-path*
  19            *lsos-files* *basic-files* *ls-files*
  20            *cls-home-dir*
  21            *cls-data-dir* *cls-examples-dir*))
  22
  23 (in-package :lisp-stat-config)
  24
  25 (defparameter *cls-home-dir*
  26   (directory-namestring
  27    (truename (asdf:system-definition-pathname :cls)))
  28   "Value considered \"home\" for our data")
  29
  30 (macrolet ((ls-dir (root-str)
  31              `(pathname (concatenate 'string
  32                                      (namestring *cls-home-dir*) ,root-str)))
  33
  34            (ls-defdir (target-dir-var  root-str)
  35              `(defvar ,target-dir-var (ls-dir ,root-str))))
  36
  37   ;; reminder of testing
  38   ;;(macroexpand '(ls-defdir *cls-asdf-dir* "ASDF"))
  39   ;;(macroexpand-1 '(ls-defdir *cls-asdf-dir* "ASDF"))
  40   ;;(macroexpand-1 '(ls-dir "ASDF"))
  41
  42   (ls-defdir *cls-asdf-dir* "ASDF/")
  43   (ls-defdir *cls-data-dir* "Data/")
  44   (ls-defdir *cls-external-dir* "external/")
  45 )
  46
  47 ;;(pushnew *cls-asdf-dir* asdf:*central-registry*)
  48
  49
  50 ;; (pushnew #p"C:/Lisp/libs/" asdf-util:*source-dirs* :test #'equal) ; eg for Microsoft
  51
  52 ;;; back to our regularly scheduled work...
  53 ;;; We should not need these, I think, but?
  54 ;; (asdf:oos 'asdf:compile-op :cffi)            ;; FFI
  55 ;; (asdf:oos 'asdf:compile-op :lift)            ;; Unit Testing
  56 ;; (asdf:oos 'asdf:load-op :cffi)            ;; FFI
  57 ;; (asdf:oos 'asdf:load-op :lift)            ;; Unit Testing
  58
  59 ;;; MAJOR HACK, FIXME!
  60 ;;(load "/media/disk/Desktop/sandbox/matlisp.git/start.lisp")
  61
  62 (in-package :cl-user)
  63
  64 (defpackage #:cls-system
  65     (:use :common-lisp :asdf))
  66
  67 (in-package #:cls-system)
  68
  69 ;;; To avoid renaming everything from *.lsp to *.lisp...
  70 ;;; borrowed from Cyrus Harmon's work, for example for the ch-util.
  71 ;;; NOT secure against serving multiple architectures/hardwares from
  72 ;;; the same file system (i.e. PPC and x86 would not be
  73 ;;; differentiated).
  74
  75 (defclass cls-lsp-source-file (cl-source-file) ())
  76 (defparameter *fasl-directory*
  77    (make-pathname :directory '(:relative
  78                                #+sbcl "fasl-sbcl"
  79                                #+openmcl "fasl-ccl"
  80                                #+openmcl "fasl-ccl"
  81                                #+cmu "fasl-cmucl"
  82                                #+clisp "fasl-clisp"
  83                                #-(or sbcl openmcl clisp cmucl) "fasl"
  84                                )))
  85
  86
  87 ;;; Handle Luke's *.lsp suffix
  88 (defmethod source-file-type ((c cls-lsp-source-file) (s module)) "lsp")
  89 (defmethod asdf::output-files :around ((operation compile-op)
  90                                        (c cls-lsp-source-file))
  91   (list (merge-pathnames *fasl-directory*
  92                          (compile-file-pathname (component-pathname c)))))
  93 ;;; again, thanks to Cyrus for saving me time...
  94
  95
  96 (defsystem "cls"
  97   :version #.(with-open-file
  98                  (vers (merge-pathnames "version.lisp-expr" *load-truename*))
  99                (read vers))
 100   :author "A.J. Rossini <blindglobe@gmail.com>"
 101   :license "BSD"
 102   :description "Common Lisp Statistics (CLS): A System for Statistical
 103   Computing with Common Lisp; based on CLS alpha1 by Luke Tierney
 104   <luke@stat.uiowa.edu> (apparently originally written when Luke was
 105   at CMU, on leave at Bell Labs?).  Last touched by him in 1991, then
 106   by AJR in 2005--2009."
 107   :serial t
 108   :depends-on (:cffi
 109                :xarray
 110                :lisp-matrix
 111                :lift
 112                :rsm-string
 113                ;;    :cl-cairo2  :cl-2d
 114                )
 115   :components ((:static-file "version" :pathname #p"version.lisp-expr")
 116                (:static-file "LICENSE")
 117                (:static-file "README")
 118
 119                ;; reading in DSV files for data access
 120 #|
 121                (:module
 122                 "csv-data"
 123                 :pathname "src/data/"
 124                 :components
 125                 ((:file "test-cybertiggyr")
 126                  (:file "dsv-cybertiggyr" :depends-on ( "test-cybertiggyr"))))
 127 |#
 128                (:module
 129                 "packaging"
 130                 :pathname #p"src/"
 131                 ;; :depends-on ("csv-data")
 132                 :components
 133                 ((:file "packages")))
 134
 135                (:module
 136                 "proto-objects"
 137                 :pathname "src/objsys/"
 138                 :serial t
 139                 :depends-on ("packaging")
 140                 :components
 141                 ((:cls-lsp-source-file "lsobjects")))
 142
 143                (:module "cls-core"
 144                         :pathname "src/basics/"
 145                         :serial t
 146                         :depends-on ("packaging" "proto-objects")
 147                         :components
 148                         (; (:cls-lsp-source-file "defsys")
 149                          (:cls-lsp-source-file "lstypes")
 150                          (:cls-lsp-source-file "lsfloat")
 151
 152                          (:cls-lsp-source-file "compound")
 153                          (:cls-lsp-source-file "lsmacros"
 154                                                     :depends-on ("compound"))
 155
 156                          (:cls-lsp-source-file "lsmath"
 157                                                     :depends-on ("compound"
 158                                                                  "lsmacros"
 159                                                                  "lsfloat"))))
 160
 161                (:module
 162                 "numerics-internal"
 163                 :pathname "src/numerics/"
 164                 :depends-on ("packaging" "proto-objects" "cls-core")
 165                 :components
 166                 ((:cls-lsp-source-file "cffiglue")
 167                  (:cls-lsp-source-file "dists"
 168                                             :depends-on ("cffiglue"))
 169 #|
 170                  (:cls-lsp-source-file "matrices"
 171                                             :depends-on ("cffiglue"))
 172                  (:cls-lsp-source-file "ladata"
 173                                             :depends-on ("cffiglue"
 174                                                          "matrices"))
 175                  (:file "linalg"
 176                         :depends-on ("cffiglue"
 177                                      "matrices"
 178                                      "ladata"))
 179 |#
 180                  ))
 181
 182
 183                ;; Dataframes and statistical structures.
 184                (:module
 185                 "stat-data"
 186                 :pathname "src/data/"
 187                 :depends-on ("packaging"
 188                              "proto-objects"
 189                              "cls-core"
 190                              "numerics-internal")
 191                 :components
 192                 ((:file "dataframe")
 193                  (:file "dataframe-array")
 194                  (:file "dataframe-matrixlike")
 195                  (:file "dataframe-listoflist")
 196                  (:file "data")
 197                  (:file "import")
 198                  ;;(:file "listoflist")
 199                  ))
 200
 201                (:module
 202                 "cls-basics"
 203                 :pathname "src/basics/"
 204                 :depends-on ("packaging"
 205                              "proto-objects"
 206                              "cls-core"
 207                              "numerics-internal"
 208                              "stat-data")
 209                 :components
 210                 ((:cls-lsp-source-file "lsbasics")))
 211
 212
 213
 214                (:module
 215                 "descriptives"
 216                 :pathname "src/describe/"
 217                 :depends-on ("packaging"
 218                              "proto-objects"
 219                              "cls-core"
 220                              "numerics-internal"
 221                              "stat-data"
 222                              "cls-basics")
 223                 :components
 224                 ((:cls-lsp-source-file "statistics")))
 225 #|
 226                (:module
 227                 "visualize"
 228                 :pathname "src/visualize/"
 229                 :depends-on ("cls-core")
 230                 :components
 231                 ((:file "plot")))
 232 |#
 233                (:module
 234                 "optimization"
 235                 :pathname "src/numerics/"
 236                 :depends-on ("packaging"
 237                              "proto-objects"
 238                              "cls-core"
 239                              "numerics-internal"
 240                              "stat-data"
 241                              "cls-basics")
 242                 :components
 243                 ((:file "optimize")))
 244
 245
 246                ;; Applications
 247                (:module
 248                 "stat-models"
 249                 :pathname "src/stat-models/"
 250                 :depends-on ("packaging"
 251                              "proto-objects"
 252                              "cls-core"
 253                              "numerics-internal"
 254                              "cls-basics"
 255                              "descriptives"
 256                              "optimization")
 257                 :components
 258                 ((:file "regression")
 259                  ;; (:cls-lsp-source-file "nonlin"
 260                  ;;       :depends-on ("regression"))
 261                  ;; (:cls-lsp-source-file "bayes"
 262                  ;;       :depends-on ("regression"))
 263                  ))
 264
 265                ;; Applications
 266                (:module
 267                 "example-data"
 268                 :pathname "Data/"
 269                 :depends-on ("packaging"
 270                              "proto-objects"
 271                              "cls-core"
 272                              "numerics-internal"
 273                              "cls-basics"
 274                              "descriptives"
 275                              "optimization")
 276                 :components
 277                 ((:file "examples")
 278                  (:cls-lsp-source-file "absorbtion")
 279                  (:cls-lsp-source-file "diabetes")
 280                  (:cls-lsp-source-file "leukemia")
 281                  (:cls-lsp-source-file "randu")
 282                  (:cls-lsp-source-file "aircraft")
 283                  (:cls-lsp-source-file "metabolism")
 284                  (:cls-lsp-source-file "book")
 285                  (:cls-lsp-source-file "heating")
 286                  (:cls-lsp-source-file "oxygen")
 287                  (:cls-lsp-source-file "stackloss")
 288                  (:cls-lsp-source-file "car-prices")
 289                  (:cls-lsp-source-file "iris")
 290                  (:cls-lsp-source-file "puromycin")
 291                  (:cls-lsp-source-file "tutorial")))
 292
 293                (:module
 294                  "lisp-stat-unittest"
 295                 :depends-on  ("packaging" "proto-objects"
 296                               "cls-core"
 297                               "numerics-internal"
 298                               "stat-data"
 299                               "cls-basics"
 300                               "descriptives"
 301                               "optimization"
 302                               "stat-models"
 303                               "example-data")
 304                  :pathname "src/unittests/"
 305                  :components ((:file "unittests")
 306                               (:file "unittests-lstypes" :depends-on ("unittests"))
 307                               (:file "unittests-specfn" :depends-on ("unittests"))
 308                               (:file "unittests-prob" :depends-on ("unittests"))
 309                               (:file "unittests-proto" :depends-on ("unittests"))
 310                               (:file "unittests-regression" :depends-on ("unittests"))
 311                               (:file "unittests-listoflist" :depends-on ("unittests"))
 312                               (:file "unittests-arrays" :depends-on ("unittests"))
 313                               (:file "unittests-dataframe" :depends-on ("unittests"))))))