ls-user.lisp

   1 ;;; -*- mode: lisp -*-
   2 ;;; Copyright (c) 2005--2007, by A.J. Rossini <blindglobe@gmail.com>
   3 ;;; See COPYRIGHT file for any additional restrictions (BSD license).
   4 ;;; Since 1991, ANSI was finally finished.  Edited for ANSI Common Lisp.
   5
   6 (defpackage :lisp-stat
   7     (:documentation "Experimentation package for LispStat.  Serious work
   8 should be packaged up elsewhere for reproducibility.")
   9   (:use :common-lisp
  10         :lisp-stat-object-system
  11         :lisp-stat-compound-data
  12         :lisp-stat-probability
  13         :lisp-stat-types
  14         :lisp-stat-float
  15         :lisp-stat-basics
  16         :lisp-stat-data
  17         :lisp-stat-math
  18         :lisp-stat-matrix
  19         :lisp-stat-linalg
  20         :lisp-stat-descriptive-statistics
  21         :lisp-stat-regression-linear)
  22   (:shadowing-import-from :lisp-stat-object-system
  23         slot-value call-method call-next-method)
  24   (:shadowing-import-from :lisp-stat-math
  25         expt + - * / ** mod rem abs 1+ 1- log exp sqrt sin cos tan
  26         asin acos atan sinh cosh tanh asinh acosh atanh float random
  27         truncate floor ceiling round minusp zerop plusp evenp oddp
  28         < <= = /= >= > complex conjugate realpart imagpart phase
  29         min max logand logior logxor lognot ffloor fceiling
  30         ftruncate fround signum cis)
  31   (:export
  32    ;; lsobjects :
  33    defproto defmeth send
  34
  35    ;; lstypes :
  36    fixnump check-nonneg-fixnum check-one-fixnum
  37    check-one-real check-one-number
  38
  39    ;; lsmacros:
  40
  41    ;; lsfloat :
  42    machine-epsilon
  43
  44    ;; compound :
  45    compound-data-p *compound-data-proto* compound-object-p
  46    compound-data-seq compound-data-length
  47    element-list element-seq
  48    sort-data order rank
  49    recursive-map-elements map-elements
  50    repeat
  51    check-sequence
  52    get-next-element make-next-element set-next-element
  53    sequencep iseq
  54    ordered-nneg-seq
  55    select which
  56    difference rseq
  57
  58    ;; lsmath.lsp
  59    ^ ** expt + - * / mod rem pmin pmax abs 1+ 1- log exp sqrt sin cos
  60    tan asin acos atan sinh cosh tanh asinh acosh atanh float random
  61    truncate floor ceiling round minusp zerop plusp evenp oddp < <= =
  62    /= >= > complex conjugate realpart imagpart phase min max
  63    logand logior logxor lognot ffloor fceiling ftruncate fround
  64    signum cis
  65
  66    ;; matrices.lisp
  67    matrixp num-rows num-cols matmult identity-matrix diagonal row-list
  68    column-list inner-product outer-product cross-product transpose
  69    bind-columns bind-rows
  70
  71    ;; linalg.lisp
  72    chol-decomp lu-decomp lu-solve determinant inverse
  73    sv-decomp qr-decomp rcondest make-rotation spline
  74    kernel-dens kernel-smooth
  75    fft make-sweep-matrix sweep-operator ax+y eigen
  76    check-real
  77    covariance-matrix matrix print-matrix solve
  78    backsolve eigenvalues eigenvectors accumulate cumsum combine
  79    lowess
  80
  81    ;; in linalg.lisp, possibly not supported by matlisp
  82    spline kernel-dens kernel-smooth
  83
  84    ;; optimize.lsp
  85    newtonmax nelmeadmax
  86
  87    ;; lispstat-macros
  88    make-rv-function make-rv-function-1
  89
  90    ;; data.lisp
  91    open-file-dialog read-data-file read-data-columns load-data
  92    load-example *variables* *ask-on-redefine*
  93    def variables savevar undef
  94
  95    ;; statistics.lsp
  96    standard-deviation quantile median interquartile-range
  97    fivnum sample
  98
  99    ;; dists
 100    log-gamma set-seed
 101    uniform-rand normal-cdf normal-quant normal-dens
 102    normal-rand bivnorm-cdf cauchy-cdf cauchy-quant cauchy-dens
 103    cauchy-rand gamma-cdf gamma-quant gamma-dens gamma-rand
 104    chisq-cdf chisq-quant chisq-dens chisq-rand beta-cdf beta-quant
 105    beta-dens beta-rand t-cdf t-quant t-dens t-rand f-cdf f-quant
 106    f-dens f-rand poisson-cdf poisson-quant poisson-pmf poisson-rand
 107    binomial-cdf binomial-quant binomial-pmf binomial-rand
 108
 109 ;;; Here is where we have a problem -- lispstat core should be core
 110 ;;; data management and config problems, with packages providing
 111 ;;; specialized extensions to LispStat, i.e. regression, nonlin
 112 ;;; regression, bayesian regression via laplace approximation, etc.
 113
 114 ;;; The following could be considered "recommended packages", similar
 115 ;;; to the idea of the recommended packages in R.
 116
 117    ;; regression.lsp
 118    regression-model regression-model-proto x y intercept sweep-matrix
 119    basis weights included total-sum-of-squares residual-sum-of-squares
 120    predictor-names response-name case-labels
 121
 122    ;; nonlin.lsp
 123    nreg-model nreg-model-proto mean-function theta-hat epsilon
 124    count-limit verbose
 125
 126    ;; bayes.lsp
 127    bayes-model bayes-model-proto bayes-internals))
 128
 129 (defpackage :lisp-stat-user
 130   (:documentation "Experimentation package for LispStat.
 131 Serious work should be placed in a similar package elsewhere for
 132 reproducibility.  But this should hint as to what needs to be
 133 done for a user- or analysis-package.")
 134   (:nicknames :ls-user)
 135   (:use :common-lisp
 136         :lisp-stat)
 137   (:shadowing-import-from :lisp-stat
 138       slot-value call-method call-next-method
 139
 140       expt + - * / ** mod rem abs 1+ 1- log exp sqrt sin cos tan
 141       asin acos atan sinh cosh tanh asinh acosh atanh float random
 142       truncate floor ceiling round minusp zerop plusp evenp oddp
 143       < <= = /= >= > complex conjugate realpart imagpart phase
 144       min max logand logior logxor lognot ffloor fceiling
 145       ftruncate fround signum cis
 146
 147       <= float imagpart))