ls-user.lisp

   1 ;;; -*- mode: lisp -*-
   2 ;;; Copyright (c) 2005--2007, by A.J. Rossini <blindglobe@gmail.com>
   3 ;;; See COPYRIGHT file for any additional restrictions (BSD license).
   4 ;;; Since 1991, ANSI was finally finished.  Edited for ANSI Common Lisp.
   5
   6 (defpackage :lisp-stat
   7     (:documentation "Experimentation package for LispStat.  Serious work
   8 should be packaged up elsewhere for reproducibility.")
   9   (:use :common-lisp
  10         :lisp-stat-object-system
  11         :lisp-stat-compound-data
  12         :lisp-stat-probability
  13         :lisp-stat-fastmap
  14         :lisp-stat-types
  15         :lisp-stat-float
  16         :lisp-stat-basics
  17         :lisp-stat-math
  18         :lisp-stat-matrix
  19         :lisp-stat-linalg
  20         :lisp-stat-regression-linear)
  21   (:shadowing-import-from :lisp-stat-object-system
  22         slot-value call-method call-next-method)
  23   (:shadowing-import-from :lisp-stat-math
  24         expt + - * / ** mod rem abs 1+ 1- log exp sqrt sin cos tan
  25         asin acos atan sinh cosh tanh asinh acosh atanh float random
  26         truncate floor ceiling round minusp zerop plusp evenp oddp
  27         < <= = /= >= > complex conjugate realpart imagpart phase
  28         min max logand logior logxor lognot ffloor fceiling
  29         ftruncate fround signum cis)
  30   (:export
  31
  32    ;; lsobjects :
  33    defproto defmeth send
  34
  35    ;; fastmap :
  36    fastmap
  37
  38    ;; lstypes
  39    fixnump check-nonneg-fixnum check-one-fixnum
  40    check-one-real check-one-number
  41
  42    ;; lsmacros
  43
  44    ;; lsfloat :
  45    machine-epsilon
  46
  47    ;; compound :
  48    compound-data-p *compound-data-proto* compound-object-p
  49    compound-data-seq compound-data-length
  50    element-list element-seq
  51    sort-data order rank
  52    recursive-map-elements map-elements
  53    repeat
  54    check-sequence
  55    get-next-element make-next-element set-next-element
  56    sequencep iseq
  57    ordered-nneg-seq
  58    select which
  59    difference rseq
  60
  61    ;; lsmath.lsp
  62    ^ ** expt + - * / mod rem pmin pmax abs 1+ 1- log exp sqrt sin cos
  63    tan asin acos atan sinh cosh tanh asinh acosh atanh float random
  64    truncate floor ceiling round minusp zerop plusp evenp oddp < <= =
  65    /= >= > complex conjugate realpart imagpart phase min max
  66    logand logior logxor lognot ffloor fceiling ftruncate fround
  67    signum cis
  68
  69    ;; matrices.lisp
  70    matrixp num-rows num-cols matmult identity-matrix diagonal row-list
  71    column-list inner-product outer-product cross-product transpose
  72    bind-columns bind-rows
  73
  74    ;; linalg.lisp
  75    chol-decomp lu-decomp lu-solve determinant inverse
  76    sv-decomp qr-decomp rcondest make-rotation spline
  77    kernel-dens kernel-smooth
  78    fft make-sweep-matrix sweep-operator ax+y eigen
  79    check-real
  80    covariance-matrix matrix print-matrix solve
  81    backsolve eigenvalues eigenvectors accumulate cumsum combine
  82    lowess
  83
  84    ;; in linalg.lisp, possibly not supported by matlisp
  85    spline kernel-dens kernel-smooth
  86
  87    ;; optimize.lsp
  88    newtonmax nelmeadmax
  89
  90    ;; lispstat-macros
  91    make-rv-function make-rv-function-1
  92
  93    ;; data.lisp
  94
  95
  96    ;; statistics.lsp
  97    open-file-dialog read-data-file read-data-columns load-data
  98    load-example *variables* *ask-on-redefine* def variables savevar
  99    undef standard-deviation quantile median interquartile-range
 100    fivnum covariance-matrix difference rseq matrix print-matrix solve
 101    backsolve eigenvalues eigenvectors accumulate cumsum combine
 102    lowess
 103
 104    ;; dists
 105    log-gamma set-seed
 106    uniform-rand normal-cdf normal-quant normal-dens
 107    normal-rand bivnorm-cdf cauchy-cdf cauchy-quant cauchy-dens
 108    cauchy-rand gamma-cdf gamma-quant gamma-dens gamma-rand
 109    chisq-cdf chisq-quant chisq-dens chisq-rand beta-cdf beta-quant
 110    beta-dens beta-rand t-cdf t-quant t-dens t-rand f-cdf f-quant
 111    f-dens f-rand poisson-cdf poisson-quant poisson-pmf poisson-rand
 112    binomial-cdf binomial-quant binomial-pmf binomial-rand
 113
 114 ;;; Here is where we have a problem -- lispstat core should be core
 115 ;;; data management and config problems, with packages providing
 116 ;;; specialized extensions to LispStat, i.e. regression, nonlin
 117 ;;; regression, bayesian regression via laplace approximation, etc.
 118
 119 ;;; The following could be considered "recommended packages", similar
 120 ;;; to the idea of the recommended packages in R.
 121
 122    ;; regression.lsp
 123    regression-model regression-model-proto x y intercept sweep-matrix
 124    basis weights included total-sum-of-squares residual-sum-of-squares
 125    predictor-names response-name case-labels
 126
 127    ;; nonlin.lsp
 128    nreg-model nreg-model-proto mean-function theta-hat epsilon
 129    count-limit verbose
 130
 131    ;; bayes.lsp
 132    bayes-model bayes-model-proto bayes-internals))
 133
 134 (defpackage :lisp-stat-user
 135   (:documentation "Experimentation package for LispStat.
 136 Serious work should be placed in a similar package elsewhere for
 137 reproducibility.  But this should hint as to what needs to be
 138 done for a user- or analysis-package.")
 139   (:nicknames :ls-user)
 140   (:use :common-lisp
 141         :lisp-stat)
 142   (:shadowing-import-from :lisp-stat
 143       slot-value call-method call-next-method
 144
 145       expt + - * / ** mod rem abs 1+ 1- log exp sqrt sin cos tan
 146       asin acos atan sinh cosh tanh asinh acosh atanh float random
 147       truncate floor ceiling round minusp zerop plusp evenp oddp
 148       < <= = /= >= > complex conjugate realpart imagpart phase
 149       min max logand logior logxor lognot ffloor fceiling
 150       ftruncate fround signum cis
 151
 152       <= float imagpart))