cls.asd

   1 ;;  -*- mode: lisp -*-
   2 ;;; Time-stamp: <2010-01-14 08:08:39 tony>
   3 ;;; Created:    <2005-05-30 17:09:47 blindglobe>
   4 ;;; File:       cls.asd
   5 ;;; Author:     AJ Rossini <blindglobe@gmail.com>
   6 ;;; Copyright:  (c) 2005--2010, by AJ Rossini <blindglobe@gmail.com>
   7 ;;; License:    MIT, see the file LICENSE.mit in this directory for details.
   8 ;;; Purpose:    ASDF specification for Common Lisp Statistics
   9
  10 ;;; What is this talk of 'release'? Klingons do not make software
  11 ;;; 'releases'.  Our software 'escapes', leaving a bloody trail of
  12 ;;; designers and quality assurance people in its wake.
  13
  14 ;; Load ASDF if it isn't loaded
  15 #-asdf(load (pathname (concatenate 'string (namestring *cls-external-dir*) "asdf")))
  16
  17 (in-package :cl-user)
  18
  19 ;;; enforce all floating reads as doubles
  20 ;; (setf *read-default-float-format* 'double-float)
  21
  22 ;;; optimization settings
  23 ;; (proclaim '(optimize (safety 2) (space 3) (speed 3)))
  24
  25 (defpackage :lisp-stat-config
  26   (:documentation "holds Common Lisp Statistics configuration/loading variables and related functions.")
  27   (:nicknames :cls-config)
  28   (:use :common-lisp)
  29   (:export *common-lisp-stat-version*
  30            *default-path*
  31            *lsos-files* *basic-files* *ls-files*
  32            *cls-home-dir* *cls-data-dir* *cls-examples-dir*))
  33
  34 (in-package :lisp-stat-config)
  35
  36 (defvar *common-lisp-stat-version* "1"
  37   "Version currently loaded and being used.  Need to make into a
  38   parseable object for version testing. Currently using integers.")
  39
  40 (defparameter *cls-home-dir*
  41   (directory-namestring
  42    (truename (asdf:system-definition-pathname :cls)))
  43   "Value considered \"home\" for the installation")
  44
  45 #|
  46 (setf *cls-home-dir*
  47       ;; #p"/cygdrive/c/local/sandbox/Lisp/CommonLispStat/"w
  48       ;; #p"/home/tony/sandbox/CommonLispStat.git/"
  49       #p"/home/tony/sandbox/CLS.git/")
  50 |#
  51
  52 (macrolet ((ls-dir (root-str)
  53              `(pathname (concatenate 'string
  54                                      (namestring *cls-home-dir*) ,root-str)))
  55
  56            (ls-defdir (target-dir-var  root-str)
  57              `(defvar ,target-dir-var (ls-dir ,root-str))))
  58   (ls-defdir *cls-asdf-dir* "ASDF/")
  59   (ls-defdir *cls-data-dir* "Data/")
  60   (ls-defdir *cls-external-dir* "external/")
  61   ;; reminder of testing
  62   ;;(macroexpand '(ls-defdir *cls-asdf-dir* "ASDF"))
  63   ;;(macroexpand-1 '(ls-defdir *cls-asdf-dir* "ASDF"))
  64   ;;(macroexpand-1 '(ls-dir "ASDF"))
  65   )
  66
  67 ;;(pushnew *cls-asdf-dir* asdf:*central-registry*)
  68 ;;(pushnew #p"C:/Lisp/libs/" asdf-util:*source-dirs* :test #'equal) ; eg for Microsoft
  69
  70 (defpackage #:cls-system
  71     (:use :common-lisp :asdf))
  72
  73 (in-package #:cls-system)
  74
  75 ;;; To avoid renaming everything from *.lsp to *.lisp...
  76 ;;; borrowed from Cyrus Harmon's work, for example for the ch-util.
  77 ;;; NOT secure against serving multiple architectures/hardwares from
  78 ;;; the same file system (i.e. PPC and x86 would not be
  79 ;;; differentiated).
  80
  81 (defclass cls-lsp-source-file (cl-source-file) ())
  82 (defparameter *fasl-directory*
  83    (make-pathname :directory '(:relative
  84                                #+sbcl "fasl-sbcl"
  85                                #+openmcl "fasl-ccl"
  86                                #+openmcl "fasl-ccl"
  87                                #+cmu "fasl-cmucl"
  88                                #+clisp "fasl-clisp"
  89                                #-(or sbcl openmcl clisp cmucl) "fasl"
  90                                )))
  91
  92
  93 ;;; Handle Luke's *.lsp suffix
  94 (defmethod source-file-type ((c cls-lsp-source-file) (s module)) "lsp")
  95 (defmethod asdf::output-files :around ((operation compile-op)
  96                                        (c cls-lsp-source-file))
  97   (list (merge-pathnames *fasl-directory*
  98                          (compile-file-pathname (component-pathname c)))))
  99 ;;; again, thanks to Cyrus for saving me time...
 100
 101
 102 (defsystem "cls"
 103   :version #.(with-open-file
 104                  (vers (merge-pathnames "version.lisp-expr" *load-truename*))
 105                (read vers))
 106   :author "A.J. Rossini <blindglobe@gmail.com>"
 107   :license "BSD"
 108   :description "Common Lisp Statistics (CLS): A System for Statistical
 109   Computing with Common Lisp; based on Common LispStat (CLS alpha1) by
 110   Luke Tierney <luke@stat.uiowa.edu> (apparently originally written
 111   when Luke was at CMU, on leave at Bell Labs?).  Last touched by him
 112   in 1991, then by AJR starting in 2005."
 113   :serial t
 114   :depends-on (:cffi
 115                :xarray
 116                :lisp-matrix ; on fnv, cl-blapack, ffa
 117                :listoflist
 118                :lift
 119                :rsm-string
 120                ;;    :cl-cairo2  :cl-2d
 121                )
 122   :components ((:static-file "version" :pathname #p"version.lisp-expr")
 123                (:static-file "LICENSE.mit")
 124                (:static-file "README")
 125
 126                (:module
 127                 "packaging"
 128                 :pathname #p"src/"
 129                 :components
 130                 ((:file "packages")))
 131
 132                (:module
 133                 "proto-objects"
 134                 :pathname "src/objsys/"
 135                 :serial t
 136                 :depends-on ("packaging")
 137                 :components
 138                 ((:cls-lsp-source-file "lsobjects")))
 139
 140                (:module "cls-core"
 141                         :pathname "src/basics/"
 142                         :serial t
 143                         :depends-on ("packaging" "proto-objects")
 144                         :components
 145                         ((:cls-lsp-source-file "lstypes")
 146                          (:cls-lsp-source-file "lsfloat")
 147
 148                          (:cls-lsp-source-file "compound")
 149                          (:cls-lsp-source-file "lsmacros"
 150                                                     :depends-on ("compound"))
 151
 152                          (:cls-lsp-source-file "lsmath"
 153                                                     :depends-on ("compound"
 154                                                                  "lsmacros"
 155                                                                  "lsfloat"))))
 156
 157                (:module
 158                 "numerics-internal"
 159                 :pathname "src/numerics/"
 160                 :depends-on ("packaging" "proto-objects" "cls-core")
 161                 :components
 162                 ((:cls-lsp-source-file "cffiglue")
 163                  (:cls-lsp-source-file "dists"
 164                                             :depends-on ("cffiglue"))
 165 #|
 166                  (:cls-lsp-source-file "matrices"
 167                                             :depends-on ("cffiglue"))
 168                  (:cls-lsp-source-file "ladata"
 169                                             :depends-on ("cffiglue"
 170                                                          "matrices"))
 171                  (:file "linalg"
 172                         :depends-on ("cffiglue"
 173                                      "matrices"
 174                                      "ladata"))
 175 |#
 176                  ))
 177
 178
 179                ;; Dataframes and statistical structures.
 180                (:module
 181                 "stat-data"
 182                 :pathname "src/data/"
 183                 :depends-on ("packaging"
 184                              "proto-objects"
 185                              "cls-core"
 186                              "numerics-internal")
 187                 :components
 188                 ((:file "dataframe")
 189                  (:file "dataframe-array")
 190                  (:file "dataframe-matrixlike")
 191                  (:file "dataframe-listoflist")
 192                  (:file "data")
 193                  (:file "data-xls-compat")
 194                  (:file "import")))
 195
 196                (:module
 197                 "cls-basics"
 198                 :pathname "src/basics/"
 199                 :depends-on ("packaging"
 200                              "proto-objects"
 201                              "cls-core"
 202                              "numerics-internal"
 203                              "stat-data")
 204                 :components
 205                 ((:cls-lsp-source-file "lsbasics")))
 206
 207
 208
 209                (:module
 210                 "descriptives"
 211                 :pathname "src/describe/"
 212                 :depends-on ("packaging"
 213                              "proto-objects"
 214                              "cls-core"
 215                              "numerics-internal"
 216                              "stat-data"
 217                              "cls-basics")
 218                 :components
 219                 ((:cls-lsp-source-file "statistics")))
 220 #|
 221                (:module
 222                 "visualize"
 223                 :pathname "src/visualize/"
 224                 :depends-on ("cls-core")
 225                 :components
 226                 ((:file "plot")))
 227 |#
 228                (:module
 229                 "optimization"
 230                 :pathname "src/numerics/"
 231                 :depends-on ("packaging"
 232                              "proto-objects"
 233                              "cls-core"
 234                              "numerics-internal"
 235                              "stat-data"
 236                              "cls-basics")
 237                 :components
 238                 ((:file "optimize")))
 239
 240
 241                ;; Applications
 242                (:module
 243                 "stat-models"
 244                 :pathname "src/stat-models/"
 245                 :depends-on ("packaging"
 246                              "proto-objects"
 247                              "cls-core"
 248                              "numerics-internal"
 249                              "cls-basics"
 250                              "descriptives"
 251                              "optimization")
 252                 :components
 253                 ((:file "regression")
 254                  ;; (:cls-lsp-source-file "nonlin"
 255                  ;;       :depends-on ("regression"))
 256                  ;; (:cls-lsp-source-file "bayes"
 257                  ;;       :depends-on ("regression"))
 258                  ))
 259
 260                ;; Applications
 261                (:module
 262                 "example-data"
 263                 :pathname "Data/"
 264                 :depends-on ("packaging"
 265                              "proto-objects"
 266                              "cls-core"
 267                              "numerics-internal"
 268                              "cls-basics"
 269                              "descriptives"
 270                              "optimization")
 271                 :components
 272                 ((:file "examples")
 273                  (:cls-lsp-source-file "absorbtion")
 274                  (:cls-lsp-source-file "diabetes")
 275                  (:cls-lsp-source-file "leukemia")
 276                  (:cls-lsp-source-file "randu")
 277                  (:cls-lsp-source-file "aircraft")
 278                  (:cls-lsp-source-file "metabolism")
 279                  (:cls-lsp-source-file "book")
 280                  (:cls-lsp-source-file "heating")
 281                  (:cls-lsp-source-file "oxygen")
 282                  (:cls-lsp-source-file "stackloss")
 283                  (:cls-lsp-source-file "car-prices")
 284                  (:cls-lsp-source-file "iris")
 285                  (:cls-lsp-source-file "puromycin")
 286                  (:cls-lsp-source-file "tutorial")))
 287
 288                (:module
 289                  "lisp-stat-unittest"
 290                 :depends-on  ("packaging" "proto-objects"
 291                               "cls-core"
 292                               "numerics-internal"
 293                               "stat-data"
 294                               "cls-basics"
 295                               "descriptives"
 296                               "optimization"
 297                               "stat-models"
 298                               "example-data")
 299                  :pathname "src/unittests/"
 300                  :components ((:file "unittests")
 301                               (:file "unittests-lstypes" :depends-on ("unittests"))
 302                               (:file "unittests-specfn" :depends-on ("unittests"))
 303                               (:file "unittests-prob" :depends-on ("unittests"))
 304                               (:file "unittests-proto" :depends-on ("unittests"))
 305                               (:file "unittests-regression" :depends-on ("unittests"))
 306                               (:file "unittests-listoflist" :depends-on ("unittests"))
 307                               (:file "unittests-arrays" :depends-on ("unittests"))
 308                               (:file "unittests-dataframe" :depends-on ("unittests"))))))
 309
 310 #|
 311  (defmethod perform ((o test-op) (c (eql (find-system :cls))))
 312     (describe (lift:run-tests :suite 'lisp-stat-unittests::lisp-stat-ut)))
 313 |#