cls.asd

   1 ;;  -*- mode: lisp -*-
   2 ;;; Time-stamp: <2010-10-10 16:04:08 tony>
   3 ;;; Created:    <2005-05-30 17:09:47 blindglobe>
   4 ;;; File:       cls.asd
   5 ;;; Author:     AJ Rossini <blindglobe@gmail.com>
   6 ;;; Copyright:  (c) 2005--2010, by AJ Rossini <blindglobe@gmail.com>
   7 ;;; License:    MIT, see the file LICENSE.mit in this directory for details.
   8 ;;; Purpose:    ASDF specification for Common Lisp Statistics
   9
  10 ;;; What is this talk of 'release'? Klingons do not make software
  11 ;;; 'releases'.  Our software 'escapes', leaving a bloody trail of
  12 ;;; designers and quality assurance people in its wake.
  13
  14 ;; Load ASDF if it isn't loaded -- BUT we need to ensure that we sync
  15 ;; properly with the new ASDF!  Maybe we should make the git repo a
  16 ;; submodule, and tag a particular version to use, pulling that
  17 ;; version?
  18
  19 #-asdf(load (pathname (concatenate 'string (namestring *cls-external-dir*) "asdf")))
  20
  21 (in-package :cl-user)
  22
  23 ;;(pushnew *cls-asdf-dir* asdf:*central-registry*)
  24 ;;(pushnew #p"C:/Lisp/libs/" asdf-util:*source-dirs* :test #'equal) ; eg for Microsoft
  25
  26 (cl:defpackage #:cls-system
  27     (:use :common-lisp :asdf))
  28
  29 (in-package #:cls-system)
  30
  31 ;;; To avoid renaming everything from *.lsp to *.lisp...  borrowed
  32 ;;; from Cyrus Harmon's work, for example for the ch-util.  NOT secure
  33 ;;; against serving multiple architectures/hardwares from the same
  34 ;;; file system (i.e. PPC and x86 would not be differentiated).
  35 ;;; However, this might be more of a solution for quicklisp?
  36
  37 (defclass cls-lsp-source-file (cl-source-file) ())
  38 (defparameter *fasl-directory*
  39    (make-pathname :directory '(:relative
  40                                #+sbcl "fasl-sbcl"
  41                                #+openmcl "fasl-ccl"
  42                                #+openmcl "fasl-ccl"
  43                                #+cmu "fasl-cmucl"
  44                                #+clisp "fasl-clisp"
  45                                #-(or sbcl openmcl clisp cmucl) "fasl"
  46                                )))
  47
  48 ;;; Handle Luke's *.lsp suffix
  49 (defmethod source-file-type ((c cls-lsp-source-file) (s module)) "lsp")
  50 (defmethod asdf::output-files :around ((operation compile-op)
  51                                        (c cls-lsp-source-file))
  52   (list (merge-pathnames *fasl-directory*
  53                          (compile-file-pathname (component-pathname c)))))
  54 ;;; again, thanks to Cyrus for saving me time...
  55
  56
  57 (defsystem "cls"
  58   :version #.(with-open-file
  59                  (vers (merge-pathnames "version.lisp-expr" *load-truename*))
  60                (read vers))
  61   :author "A.J. Rossini <blindglobe@gmail.com>"
  62   :license "BSD"
  63   :description "Common Lisp Statistics (CLS): A System for Statistical
  64   Computing with Common Lisp; based on Common LispStat (CLS alpha1) by
  65   Luke Tierney <luke@stat.uiowa.edu> (apparently originally written
  66   when Luke was at CMU, on leave at Bell Labs?).  Last touched by him
  67   in 1991, then by AJR starting in 2005."
  68   :serial t
  69   :depends-on (:cffi
  70                :xarray
  71                :lisp-matrix ; on fnv, cl-blapack, ffa
  72                :listoflist
  73                :lift
  74                :rsm-string
  75                ;;      :cl-random ;; or cl-variates, or...?
  76                ;; :cl-cairo2  :cl-2d
  77                )
  78   :components ((:static-file "version" :pathname #p"version.lisp-expr")
  79                (:static-file "LICENSE.mit")
  80                (:static-file "README")
  81
  82                (:module
  83                 "packaging"
  84                 :pathname #p"src/"
  85                 :serial t
  86                 :components
  87                 ((:file "packages")
  88                  (:file "config")))
  89
  90                (:module
  91                 "proto-objects"
  92                 :pathname "src/objsys/"
  93                 :serial t
  94                 :depends-on ("packaging")
  95                 :components
  96                 ((:cls-lsp-source-file "lsobjects")))
  97
  98                (:module "cls-core"
  99                         :pathname "src/basics/"
 100                         :serial t
 101                         :depends-on ("packaging" "proto-objects")
 102                         :components
 103                         ((:cls-lsp-source-file "lstypes")
 104                          (:cls-lsp-source-file "lsfloat")
 105
 106                          (:cls-lsp-source-file "compound")
 107                          (:cls-lsp-source-file "lsmacros"
 108                                                     :depends-on ("compound"))
 109
 110                          (:cls-lsp-source-file "lsmath"
 111                                                     :depends-on ("compound"
 112                                                                  "lsmacros"
 113                                                                  "lsfloat"))))
 114
 115                (:module
 116                 "numerics-internal"
 117                 :pathname "src/numerics/"
 118                 :depends-on ("packaging" "proto-objects" "cls-core")
 119                 :components
 120                 ((:cls-lsp-source-file "cffiglue")
 121                  (:cls-lsp-source-file "dists"
 122                                             :depends-on ("cffiglue"))
 123 #|
 124                  (:cls-lsp-source-file "matrices"
 125                                             :depends-on ("cffiglue"))
 126                  (:cls-lsp-source-file "ladata"
 127                                             :depends-on ("cffiglue"
 128                                                          "matrices"))
 129                  (:file "linalg"
 130                         :depends-on ("cffiglue"
 131                                      "matrices"
 132                                      "ladata"))
 133 |#
 134                  ))
 135
 136
 137                ;; Dataframes and statistical structures.
 138                (:module
 139                 "stat-data"
 140                 :pathname "src/data/"
 141                 :depends-on ("packaging"
 142                              "proto-objects"
 143                              "cls-core"
 144                              "numerics-internal")
 145                 :components
 146                 ((:file "dataframe")
 147                  (:file "dataframe-array")
 148                  (:file "dataframe-matrixlike")
 149                  (:file "dataframe-listoflist")
 150                  (:file "data")
 151                  (:file "data-xls-compat")
 152                  (:file "import")))
 153
 154                (:module
 155                 "cls-basics"
 156                 :pathname "src/basics/"
 157                 :depends-on ("packaging"
 158                              "proto-objects"
 159                              "cls-core"
 160                              "numerics-internal"
 161                              "stat-data")
 162                 :components
 163                 ((:cls-lsp-source-file "lsbasics")))
 164
 165
 166
 167                (:module
 168                 "descriptives"
 169                 :pathname "src/describe/"
 170                 :depends-on ("packaging"
 171                              "proto-objects"
 172                              "cls-core"
 173                              "numerics-internal"
 174                              "stat-data"
 175                              "cls-basics")
 176                 :components
 177                 ((:cls-lsp-source-file "statistics")))
 178 #|
 179                (:module
 180                 "visualize"
 181                 :pathname "src/visualize/"
 182                 :depends-on ("cls-core")
 183                 :components
 184                 ((:file "plot")))
 185 |#
 186                (:module
 187                 "optimization"
 188                 :pathname "src/numerics/"
 189                 :depends-on ("packaging"
 190                              "proto-objects"
 191                              "cls-core"
 192                              "numerics-internal"
 193                              "stat-data"
 194                              "cls-basics")
 195                 :components
 196                 ((:file "optimize")))
 197
 198
 199                ;; Applications
 200                (:module
 201                 "stat-models"
 202                 :pathname "src/stat-models/"
 203                 :depends-on ("packaging"
 204                              "proto-objects"
 205                              "cls-core"
 206                              "numerics-internal"
 207                              "cls-basics"
 208                              "descriptives"
 209                              "optimization")
 210                 :components
 211                 ((:file "regression")
 212                  ;; (:cls-lsp-source-file "nonlin"
 213                  ;;       :depends-on ("regression"))
 214                  ;; (:cls-lsp-source-file "bayes"
 215                  ;;       :depends-on ("regression"))
 216                  ))
 217
 218                ;; Applications
 219                (:module
 220                 "example-data"
 221                 :pathname "Data/"
 222                 :depends-on ("packaging"
 223                              "proto-objects"
 224                              "cls-core"
 225                              "numerics-internal"
 226                              "cls-basics"
 227                              "descriptives"
 228                              "optimization")
 229                 :components
 230                 ((:file "examples")
 231                  (:cls-lsp-source-file "absorbtion")
 232                  (:cls-lsp-source-file "diabetes")
 233                  (:cls-lsp-source-file "leukemia")
 234                  (:cls-lsp-source-file "randu")
 235                  (:cls-lsp-source-file "aircraft")
 236                  (:cls-lsp-source-file "metabolism")
 237                  (:cls-lsp-source-file "book")
 238                  (:cls-lsp-source-file "heating")
 239                  (:cls-lsp-source-file "oxygen")
 240                  (:cls-lsp-source-file "stackloss")
 241                  (:cls-lsp-source-file "car-prices")
 242                  (:cls-lsp-source-file "iris")
 243                  (:cls-lsp-source-file "puromycin")
 244                  (:cls-lsp-source-file "tutorial")))
 245
 246                (:module
 247                  "lisp-stat-unittest"
 248                 :depends-on  ("packaging" "proto-objects"
 249                               "cls-core"
 250                               "numerics-internal"
 251                               "stat-data"
 252                               "cls-basics"
 253                               "descriptives"
 254                               "optimization"
 255                               "stat-models"
 256                               "example-data")
 257                  :pathname "src/unittests/"
 258                  :components ((:file "unittests")
 259                               (:file "unittests-lstypes" :depends-on ("unittests"))
 260                               (:file "unittests-specfn" :depends-on ("unittests"))
 261                               (:file "unittests-prob" :depends-on ("unittests"))
 262                               (:file "unittests-proto" :depends-on ("unittests"))
 263                               (:file "unittests-regression" :depends-on ("unittests"))
 264                               (:file "unittests-listoflist" :depends-on ("unittests"))
 265                               (:file "unittests-arrays" :depends-on ("unittests"))
 266                               (:file "unittests-dataframe" :depends-on ("unittests"))))))
 267
 268 #|
 269  (defmethod perform ((o test-op) (c (eql (find-system :cls))))
 270     (describe (lift:run-tests :suite 'lisp-stat-unittests::lisp-stat-ut)))
 271 |#