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fixed improper generic parameter use in Tree.duplicateAs > Map, necessary
2016-05-28
Steph
a
n Saalfeld
fixed improper gene
r
ic parame
t
er use in
Tree
.
dupl
i
cateAs
.
.
.
commit
|
commitdiff
|
tree
2016-02-06
Stephan Sa
a
l
feld
replaced MLT2 in elastig monta
g
e and
a
lignment by
T
PS
commit
|
commitdiff
|
tree
2016-02-06
S
te
p
han Saalfeld
added dependenc
y
to jitk-t
p
s-1
.
3
.
2
a
nd managed trake
m
2_
t
p
s
commit
|
commitdiff
|
tree
2016-01-09
S
t
ephan S
a
alfel
d
actuall
y
use multipleh
y
p
o
theses flag
and other
fixes
commit
|
commitdiff
|
tree
2016-01-08
S
tephan Saal
f
eld
enable multipl
e
hypotheses mat
c
hing in TrakEM2's dis
t
ortion
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
Stephan S
a
alfeld
enab
l
e mu
l
tiple hypotheses matching in Ali
g
n b
a
c
k
wards
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
Stepha
n
Saalfeld
use
m
i
pm
a
p threads nu
m
ber p
r
o
perty fo
r
parallel intensit
y
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
S
t
ephan
Sa
a
lfeld
render intens
i
t
y
cor
r
ected
images in
a single thread
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
Stephan Saalfel
d
preparing
r
elease pom-trak
e
m2-2
.
0
.
0, Ve
c
tor
S
tring-2
.
.
.
commit
|
commitdiff
|
tree
2015-09-04
Stephan Sa
a
lfeld
next development cycle
commit
|
commitdiff
|
tree
2015-09-03
St
e
pha
n
Saal
f
eld
p
om-trakem2-1
.
4
.
0
commit
|
commitdiff
|
tree
2015-09-03
Stephan Saalfeld
added mul
t
i
-threadin
g
for coeffi
c
ients matching
commit
|
commitdiff
|
tree
2015-09-03
Ste
p
han Saalf
e
ld
put match intensities comm
a
nds into workers to
b
lock
.
.
.
commit
|
commitdiff
|
tree
2015-09-02
Steph
a
n S
a
alfeld
Working version without multi-
t
hreading
and bureaucra
t
s
commit
|
commitdiff
|
tree
2015-09-02
Stephan Saalfeld
included match intensities
plugin, bui
l
d
with S
N
APSHOTS
.
.
.
commit
|
commitdiff
|
tree
2015-08-31
S
t
ephan Saalfeld
Merge pull requ
e
s
t
#11 from hanslovsk
y
/
m
a
ster
commit
|
commitdiff
|
tree
2015-04-07
Ste
p
han Saalf
e
ld
next development cycl
e
commit
|
commitdiff
|
tree
2015-04-07
Stephan S
a
alfel
d
release
p
om-trakem2-1
.
3
.
3
commit
|
commitdiff
|
tree
2015-03-26
Stephan Saalfeld
r
e-
r
ele
a
se pom-
t
r
a
k
e
m
2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-24
Step
h
a
n
Saalfeld
next develop
m
ent cycle
commit
|
commitdiff
|
tree
2015-03-24
Stephan Saalfeld
r
e
-rele
a
se pom-trak
e
m2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-19
Stephan Saalfeld
next develo
p
ment
c
y
cle (pro
b
lem
with Ec
l
ipse Kep
l
er
.
.
.
commit
|
commitdiff
|
tree
2015-03-19
Stephan
Sa
a
lf
e
ld
release pom-trakem2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-07
S
t
epha
n
Saalfeld
next
development c
y
cle
commit
|
commitdiff
|
tree
2015-03-07
Stephan Saalfeld
r
elease
commit
|
commitdiff
|
tree
2015-02-14
Ste
p
h
a
n
Saalfeld
nex
t
development cycle
commit
|
commitdiff
|
tree
2015-02-14
Ste
p
han Saalfeld
release
commit
|
commitdiff
|
tree
2015-02-14
Stephan Saalfeld
r
elea
s
e
commit
|
commitdiff
|
tree
2015-01-14
St
e
phan
S
aalfeld
a
dded gett
e
r
s
for mls2 p, q, and w
commit
|
commitdiff
|
tree
2015-01-12
Stephan Sa
a
lfeld
Adde
d
Eri
c
Trautman's
check fo
r
numb
e
r
of t
h
reads to
.
.
.
commit
|
commitdiff
|
tree
2015-01-12
Stephan Saalfeld
Fi
x
ed Value2Noise
F
ilter max expo
r
t
commit
|
commitdiff
|
tree
2014-12-19
S
t
ephan Saalfeld
b
u
mp
to next d
e
velopment cycle
commit
|
commitdiff
|
tree
2014-12-19
Stephan
S
aalfeld
Merge r
e
mote-tracking bran
c
h 'origin'
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saa
l
feld
reproducible build pom-trakem2-1
.
1
.
2
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saalfeld
separated CoordinateT
r
ansf
o
rm p
a
rts of
l
enscorrection
.
.
.
commit
|
commitdiff
|
tree
2014-12-18
Stephan
S
aalfeld
a
dd
e
d
m
ultip
l
e level dow
n
sampling for Col
o
r
P
rocess
o
r
commit
|
commitdiff
|
tree
2014-12-17
Stephan
Saalfeld
bump to
next dev
e
lopment
c
ycle
commit
|
commitdiff
|
tree
2014-12-17
Ste
p
han Sa
a
lfel
d
second try to make rep
r
oducibl
e
bu
i
ld
pom-trake
m
2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-17
Step
h
an
Saalf
e
ld
Merge
branch
'
i
ntensity-tr
a
nsform'
commit
|
commitdiff
|
tree
2014-12-13
Steph
a
n Saalfeld
b
ump t
o
next
d
e
v
elopment
cycle
commit
|
commitdiff
|
tree
2014-12-13
Stephan Saal
f
eld
re
p
r
oducible build po
m
-trakem2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
Merge re
m
ote-tracking bra
n
c
h
'
origin/m
a
st
e
r'
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfe
l
d
bump to n
e
w
d
evelopment cycle
commit
|
commitdiff
|
tree
2014-12-12
Ste
p
h
an Saalfeld
r
eproducibl
e
build p
o
m-trakem
2
-1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
St
e
phan S
a
a
lf
e
ld
Merge br
a
nch 'master' of github
.
com:t
r
ak
e
m2/Trak
E
M2
commit
|
commitdiff
|
tree
2014-12-12
Stephan
S
a
a
lfeld
added ValueToNoi
s
e filt
e
r which fills a given inten
s
it
y
.
.
.
commit
|
commitdiff
|
tree
2014-11-12
Step
h
a
n
S
a
a
lf
e
ld
U
p
d
at
e
README
commit
|
commitdiff
|
tree
2014-11-12
Stepha
n
Saalfeld
Upd
a
te READ
M
E
commit
|
commitdiff
|
tree
2014-11-07
Stepha
n
S
a
alfeld
Merge branch 'master
'
i
nto coordXf
m
Fix
commit
|
commitdiff
|
tree
2014-11-07
Stephan Saalfeld
Mer
g
e remo
t
e-tr
a
cking branch 'or
i
gin/intensity-transform'
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saalfeld
a
d
ded Robus
t
N
ormalizedL
o
ca
l
C
ontrastFilter, fast and
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saalf
e
ld
Changed de
f
ault
b
l
ock radius in No
r
malizeLocalContrast
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfeld
au
t
o-r
e
moved some trainin
g
wh
i
te
s
paces
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saa
l
f
e
ld
added run
method
t
hat does not need a w
o
rker for ea
s
ier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saa
l
feld
aut
o
-remo
v
ed
som
e
t
r
ailing whitespaces
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalf
e
ld
para
l
lel
i
zed intersect
i
on tests for pair
O
verl
a
ppingTiles
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfeld
au
t
o-fin
a
l
i
ze
c
o
nstant p
r
operties
and par
a
meters in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Step
h
an
S
aalfeld
thr
e
adsafe Uti
l
s
.
e
nsure
(
File)
commit
|
commitdiff
|
tree
2014-06-06
Stephan Saalfeld
fixed bug in generation of alpha
m
ask
s
commit
|
commitdiff
|
tree
2014-06-05
S
t
e
phan Saalfeld
externalized Di
s
tortionCorrection
.
run to enabl
e
ca
l
ling
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
St
e
phan
Saalfeld
Eclipse autu-cosmetic
s
in D
i
sto
r
tionCorrection
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfeld
Merge
branch 'mas
t
er' into intensity-transform
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfeld
use st
a
ndard write
r
for coordinate
t
ransfor
m
s
commit
|
commitdiff
|
tree
2014-05-19
S
t
ep
h
an Sa
a
lf
e
ld
depen
d
o
n jav
a
x
.
media
f
or
jai
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfeld
added methods for dow
n
sampling mor
e
th
a
n one le
v
el
commit
|
commitdiff
|
tree
2013-10-10
Stephan Saalf
e
ld
replaced plugins
.
confi
g
with th
e
Fiji version
commit
|
commitdiff
|
tree
2013-09-20
St
e
phan S
a
al
f
e
ld
Merge br
a
nch 'master' of ssh:/
/
repo
.
or
.
cz/srv/g
i
t/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalfeld
Mer
g
e branch 'm
a
ster' of ssh://repo
.
or
.
cz/s
r
v
/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan
S
a
alfeld
Parallel pair
O
verlapp
i
ngTiles
did no
t
work and repor
t
ed
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
S
tephan
Saalfe
l
d
Merge branch 'master' of ss
h
://r
e
po
.
o
r
.
cz/s
r
v/git
/
trakem2
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saal
f
eld
re-
a
dded legacy
o
pti
m
ize
r
for spring m
e
shes,
t
his wo
u
ld
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfeld
T
2
-NIT/pom
.
xml can in
h
erit version num
b
er fr
o
m parent
commit
|
commitdiff
|
tree
2013-08-14
Stephan Sa
a
lfeld
adde
d
mi
s
sing dependencies
to
java3d core-util
s
and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
S
t
ephan Saalfe
l
d
s
et par
e
nt pom of pom-trakem2 to pom-fiji
.
2
.
0
.
0
-
SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saal
f
eld
Merge bran
c
h '
s
pring-mes
h
2' of
ssh
:
//repo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
S
tephan Saalfeld
Mer
g
e branch '
m
aster'
into spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
S
t
ephan Saalfeld
ra
i
s
ed mpicbg de
p
e
n
dency versi
o
n to 0
.
6
.
1-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan S
a
alfeld
raise
d
depende
n
cy
t
o
Simple_Ne
u
rite_Tracer to
2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Step
h
an
Saal
f
eld
Merge branch 'mas
t
er' into spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
S
t
epha
n
Saalfeld
ad
d
ed comme
n
ts and au
t
o-
f
inalize in Di
s
tortionCorrection/NLT
commit
|
commitdiff
|
tree
2013-08-12
Stephan
S
aalfe
l
d
adde
d
mpicbg
.
vers
i
on as ma
v
en
property,
commit
|
commitdiff
|
tree
2013-05-06
Stephan S
a
alfeld
track
m
ove of the imgli
b
1
d
e
pendency
commit
|
commitdiff
|
tree
2013-04-22
Stephan Saalf
e
ld
Merge branch 'master'
into s
p
r
ing-mesh2
commit
|
commitdiff
|
tree
2013-03-05
Stephan Saalfeld
Merge
bran
c
h '
m
ast
e
r'
into sp
r
i
ng-mesh
2
commit
|
commitdiff
|
tree
2013-01-18
Steph
a
n Saa
l
feld
use
a
r
raylist wher
e
arrayl
i
sts
are ret
u
rned
commit
|
commitdiff
|
tree
2013-01-16
S
t
ephan
S
a
alfeld
adjust m
p
i
c
b
g
s
pr
i
ng-
m
es
h
2
which needs less damp
i
ng
commit
|
commitdiff
|
tree
2013-01-11
S
t
ephan Saalfeld
Fixed bu
g
i
n
P
a
tch
.
ge
t
FullCoord
i
nateTransform t
h
at
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
St
e
phan Saalfe
l
d
Cha
n
ged fixedPatches/Tiles
i
nput co
l
lec
t
ion to Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Pair constructor has to b
e
pu
b
l
i
c
commit
|
commitdiff
|
tree
2013-01-10
S
tephan Saalfeld
f
o
rgot to set isAligned flag in e
l
astic layer
a
lignmen
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
S
tephan Saal
f
eld
elastic mont
a
ge param must be public
commit
|
commitdiff
|
tree
2013-01-07
Stepha
n
Saal
f
eld
a
d
de
d
Patch
.
getFull
C
ordinate
T
r
a
nsform()
which gene
r
ates a
commit
|
commitdiff
|
tree
2013-01-07
Stepha
n
S
a
alfeld
*
removed is
A
ligned from Abstract
Param
c
l
a
ss
commit
|
commitdiff
|
tree
2013-01-05
Steph
a
n Sa
a
lfeld
877: it i
s
l
e
gal f
o
r layerTh
i
ng to be n
u
l
l
commit
|
commitdiff
|
tree
2012-12-21
Stephan Saalfeld
Corrected
s
everal long-standing issues with
S
IF
T
-linear and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
R
e
g
u
larizedLayerA
l
ignme
n
t got more flex
i
ble API methods and
commit
|
commitdiff
|
tree
2012-12-19
Ste
p
han Saalfeld
clear
i
ng
cac
h
e in layer
a
lignment
m
ust
be default true
commit
|
commitdiff
|
tree
2012-12-19
Ste
p
h
an Sa
a
lfel
d
print optimizer results an
d
do not
p
rint "matc
h
ing
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Steph
a
n Saal
f
eld
do not remove empty
laye
r
s
in
l
ayer a
l
ignm
e
n
t
commit
|
commitdiff
|
tree
2012-11-07
Stephan Sa
a
lfeld
fix
e
d versi
o
n number of mpicbg dependency
commit
|
commitdiff
|
tree
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