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protect mysql tests using mysql_enabled()
2009-09-10
Christ
o
p
her Lee
prote
c
t mysql
t
ests using mys
q
l_
e
nabled()
commit
|
commitdiff
|
tree
2009-09-10
Christo
p
he
r
Lee
p
r
o
tected som
e
blast tests
commit
|
commitdiff
|
tree
2009-09-10
Christopher Lee
a
d
ded co
m
ment
commit
|
commitdiff
|
tree
2009-09-10
Christ
o
pher
Lee
improved iterator trappin
g
tests
commit
|
commitdiff
|
tree
2009-09-10
C
h
ri
s
t
opher Lee
made
S
QLTabl
e
Clustered
u
s
e
standard ite
r
at
o
r
methods
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
C
hris
t
opher Lee
changed BlockGener
a
t
o
r to sele
c
t mu
l
tiple
c
o
l
umns at
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Christopher Lee
added support f
o
r new iteratio
n
ap
p
ro
a
ch to
S
QLTableM
u
lt
i
NoCache
commit
|
commitdiff
|
tree
2009-09-10
Christopher Lee
Merge
commit 'remotes/c
t
b/tu
t
orial' into
tryme
commit
|
commitdiff
|
tree
2009-09-10
Christophe
r
Lee
Me
r
ge commit 'remo
t
e
s/
c
tb/xmlrpc
_
patches' into tryme
commit
|
commitdiff
|
tree
2009-09-10
Chr
i
stopher
Lee
a
dded order-by pickling test
commit
|
commitdiff
|
tree
2009-09-10
Christoph
e
r L
e
e
added SQLTa
b
l
e
pickl
e
test
commit
|
commitdiff
|
tree
2009-09-10
Christop
h
e
r
L
ee
added test
s
w/o serverSideCursors or blockItera
t
ors
commit
|
commitdiff
|
tree
2009-09-10
Christopher Lee
added
s
e
r
v
erSid
e
C
u
r
sors and
b
lockIte
r
ators options
commit
|
commitdiff
|
tree
2009-09-10
Christophe
r
L
e
e
ex
p
ande
d
random v
a
lue order
by test
commit
|
commitdiff
|
tree
2009-09-09
Ch
r
istopher
L
ee
Merge commit 'remo
t
es
/
mkszuba/
s
qltable_orderby' into
.
.
.
commit
|
commitdiff
|
tree
2009-09-09
Ch
r
i
s
topher Lee
added SQLTable_Test
.
te
s
t_orderBy()
commit
|
commitdiff
|
tree
2009-09-09
C
h
ristopher Lee
u
p
dated
BlockGener
a
tor
t
o work with gen
e
raliz
e
d
ord
e
rB
y
.
.
.
commit
|
commitdiff
|
tree
2009-09-09
C
hristopher Lee
g
en
e
ralize BlockGene
r
ator t
o
wor
k
with st
r
ing keys
commit
|
commitdiff
|
tree
2009-09-09
Chri
s
topher Lee
f
i
x
e
d small syntax
error
commit
|
commitdiff
|
tree
2009-09-09
Chris
t
o
pher Lee
added CursorCloser() mechanism
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
BlockG
e
n
e
rator now wor
k
i
ng
commit
|
commitdiff
|
tree
2009-09-09
C
h
rist
o
phe
r
Le
e
fixe
s
to
p
revent unn
e
cess
a
ry
i
nv
o
cation o
f
cmp()
commit
|
commitdiff
|
tree
2009-09-09
Ch
r
istopher Lee
fixes to prevent u
n
ne
c
ess
a
ry
i
n
v
o
cation of iter()
commit
|
commitdiff
|
tree
2009-09-09
Christoph
e
r Lee
more tests
for unwa
n
t
ed iteration
commit
|
commitdiff
|
tree
2009-09-09
C
h
ristopher
L
e
e
basic
call for block
generat
o
r based iter
commit
|
commitdiff
|
tree
2009-09-09
Ch
r
istopher Le
e
a
d
de
d
test
for u
n
wanted
i
tera
t
ion
commit
|
commitdiff
|
tree
2009-09-09
Chris
t
o
p
her
L
ee
first implementation of BlockGenerator iteration mechanism
commit
|
commitdiff
|
tree
2009-09-09
C
hristopher Lee
make it
e
rvalues
/
i
t
er
i
tems
use sam
e
orderBy
r
ules
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
ge
n
eralized iter_ke
y
s()
,
a
d
ded ord
e
rB
y
support
commit
|
commitdiff
|
tree
2009-09-08
Chr
i
stoph
e
r Lee
created MySQLServerI
n
fo class that uses SSCursor for
.
.
.
commit
|
commitdiff
|
tree
2009-09-08
C
hrist
o
pher Lee
added
u
seS
t
reamin
g
option to my
s
ql_con
n
ect()
commit
|
commitdiff
|
tree
2009-09-08
Chris
t
o
p
her Lee
f
ixed ne
w
_cursor() to propagate arraysize setting properly
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added t
e
st for bug 84
commit
|
commitdiff
|
tree
2009-09-05
Christopher
Lee
fixed bug 84
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added te
s
t
for
G
rap
h
View keys
/
l
e
n on
l
y ref
l
ecting
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christophe
r
Lee
added inverse support for Grap
h
Vie
w
commit
|
commitdiff
|
tree
2009-09-05
Christopher
Lee
add
e
d test for
G
raphView
inver
s
e and improved
MapView
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Le
e
make G
r
aphView raise KeyError i
f
key has n
o
r
o
w
s in
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christ
o
phe
r
Lee
added tests for MapView
iterators and len
commit
|
commitdiff
|
tree
2009-09-05
Christop
h
er Lee
avoid possibl
e
iter / keys i
n
f
inite loop
commit
|
commitdiff
|
tree
2009-09-05
Chris
t
o
pher Lee
added l
o
ts of test
s
f
o
r graph
s
wit
h
n
o
d
es i
n
s
t
e
a
d of
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christ
o
pher Lee
c
o
rrected the SQLGraph
it
e
rator methods
a
nd improved
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
testutil needed new name of ge
t
_na
m
e_cursor()
commit
|
commitdiff
|
tree
2009-09-05
Chris
t
opher Lee
made get_name
_
cursor()
use D
B
ServerInfo
commit
|
commitdiff
|
tree
2009-09-05
C
h
ristopher Le
e
added iteration test t
o
gr
a
p
h
_test
.
py
commit
|
commitdiff
|
tree
2009-09-05
Christ
o
pher Lee
use n
e
w iter_keys(
)
method
commit
|
commitdiff
|
tree
2009-09-05
Christo
p
her L
e
e
a
d
d
e
d be
t
t
er i
t
er
meth
o
d
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristopher Le
e
Merge commit 'remotes/c
t
b/xmlrpc_
p
atc
h
es'
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
to
p
her Lee
Merge commi
t
'remotes/m
k
sz
u
ba/fi
n
k
'
commit
|
commitdiff
|
tree
2009-09-04
Christ
o
pher Lee
remove
d
tests/oldtests/nlmsa_dm2_megates
t
.
py
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
M
e
rge c
o
mmit 'remotes
/
m
kszuba/d
o
cfi
x
es'
commit
|
commitdiff
|
tree
2009-09-04
C
hristopher Lee
M
e
rge
commit 'remotes/mk
s
zuba/cleanup'
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
ophe
r
L
ee
Merge commit 'remotes/mkszub
a
/bsddb
_
bsddb3'
commit
|
commitdiff
|
tree
2009-09-04
Christoph
e
r Lee
c
orrected Cl
a
ss
i
cUnpi
c
kler
r
e
f
erence to point
t
o cl
a
s
s
util
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
her Lee
removed
unused
s
h
e
lve impor
t
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stopher
Lee
remo
v
ed unused im
p
or
t
it
e
m
commit
|
commitdiff
|
tree
2009-09-04
C
hrist
o
p
her
L
e
e
Merge branch 'tutori
a
l'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
add
e
d argument to
make
MapV
i
ew inverse
able to recons
t
itut
e
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stopher Lee
added test of
l
en
(
) meth
o
d f
o
r SQLTa
b
le
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristopher Lee
a
dded db
tuto
r
ial
(
mapp
i
ng) ba
c
k to guidelist
table
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christopher
L
ee
m
a
p
pin
g
tut
o
rial
j
ust cov
e
r
s mappings,
s
o
r
emove
d
reference
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
topher Lee
added MapView
i
nve
r
s
e
ex
a
mpl
e
to tutor
i
al
commit
|
commitdiff
|
tree
2009-09-04
Christop
h
er Lee
added
MapView
d
ocs
commit
|
commitdiff
|
tree
2009-09-04
Christopher Le
e
adde
d
test for tr
a
pping non-invertible Map
V
iew
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
topher Lee
a
d
d
ed test
for __inver
t
__ method
to MapVi
e
w
commit
|
commitdiff
|
tree
2009-09-04
Christop
h
er Lee
add
e
d _
_
i
nver
t
__ method to MapVi
e
w
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
ad
d
ed mater
i
al on
S
QL Map
V
iew
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristopher Lee
added section
s
o
n ma
p
ping to disk / worldbase
commit
|
commitdiff
|
tree
2009-09-04
C
hristopher
L
ee
chang
e
d
title of xmlrp
c
tutorial
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
t
opher Lee
m
i
nor fi
x
es to g
e
ne
t
u
torial
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
h
er Lee
moved ma
t
erial out o
f
worl
d
base
.
rs
t
to worldba
s
e2
.
rst
commit
|
commitdiff
|
tree
2009-09-04
Christopher
L
ee
separate
tutorial
on saving data to world
b
ase
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
to
p
her Lee
mo
v
ed sch
e
ma
m
a
t
erial to
w
o
rldbase
2
.
r
st t
u
t
o
rial
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
ad
d
ed
worl
d
bas
e
s
e
c
urity warning
commit
|
commitdiff
|
tree
2009-09-03
Chri
s
topher
L
ee
more
r
evisions about downloading tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
revisions t
o
d
o
wnload=True sect
i
on
commit
|
commitdiff
|
tree
2009-09-03
Chri
s
topher Lee
added d
e
p
endency
s
ection i
n
worldbase
.
rst tutori
a
l
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added
wo
r
l
d
ba
s
e
.
di
r
() tu
t
orial
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
is
t
op
h
er Lee
a
dd
e
d in
t
ro section
t
o w
o
rldbase
.
rst tut
o
rial
commit
|
commitdiff
|
tree
2009-09-03
C
hris
t
ophe
r
Lee
added P
u
rpos
e
to alig
n
m
ent
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christoph
e
r Lee
mo
r
e little chang
e
s
to
ann
o
tation2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
stophe
r
Lee
added Purpose and
i
n
t
ro to annotations2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
C
h
ris
t
opher Lee
mo
v
ed n
e
w basic tuto
r
i
a
l
s
to to
p
of guide
list
commit
|
commitdiff
|
tree
2009-09-03
C
h
ristopher
L
e
e
m
in
o
r fix to db_basic
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christopher
L
ee
updates to refe
r
en
c
e/sqlgraph
.
rst docs
commit
|
commitdiff
|
tree
2009-09-03
C
hris
t
opher Lee
added SQL
saving section to d
b
tuto
r
ial
commit
|
commitdiff
|
tree
2009-09-03
Christopher Le
e
basic database tutorial
commit
|
commitdiff
|
tree
2009-09-03
C
h
ristop
h
e
r
Lee
added back __len__
(
)
t
o SQLTableBase
.
H
ow i
n
heck
.
.
.
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
isto
p
her Lee
added section o
n
Pr
e
fixUnionDict
commit
|
commitdiff
|
tree
2009-09-02
C
h
r
istopher Lee
added s
e
ction on pluggi
n
g in y
o
ur own sequence parser
commit
|
commitdiff
|
tree
2009-09-02
Ch
r
istopher
Le
e
moved old
m
at
e
ria
l
out to
compgenomics
.
rst
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
so
m
e
m
inor sequence tutorial revisions
commit
|
commitdiff
|
tree
2009-09-02
Christopher L
e
e
added tuto
r
ial
section on a
c
cess
i
ng sequence database
.
.
.
commit
|
commitdiff
|
tree
2009-09-02
Chri
s
top
h
er Lee
spli
t
up bullet points to integrate into
the code example
commit
|
commitdiff
|
tree
2009-09-02
Chris
t
opher Lee
revis
e
d sequenc
e
t
u
torial intro (firs
t
part)
commit
|
commitdiff
|
tree
2009-09-02
Chris
t
o
phe
r
Lee
Merge commit 'remotes/ctb/xmlrpc_t
u
torial'
i
nto tutorial
commit
|
commitdiff
|
tree
2009-09-02
Ch
r
i
s
topher Lee
Merge commit
'
remot
e
s/ctb/do
c
_alignment' into t
u
torial
commit
|
commitdiff
|
tree
2009-09-02
Christopher Le
e
revised gff3
code
commit
|
commitdiff
|
tree
2009-09-02
Christ
o
pher Lee
a
d
ded GFF3 exam
p
l
e
of gene bui
l
d
i
ng
commit
|
commitdiff
|
tree
2009-09-01
Chris
t
opher
Lee
M
erge commit 'remotes/mkszuba/xmlrpc
_
tutori
a
l' into
.
.
.
commit
|
commitdiff
|
tree
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