add greylag-flatten-fasta, fix bugs in fasta reader
commit84d86e001dda4546747888a13982c83930917484
authorMichael Coleman <mkc@stowers-institute.org>
Thu, 22 May 2008 20:28:52 +0000 (22 15:28 -0500)
committerMichael Coleman <mkc@stowers-institute.org>
Thu, 22 May 2008 20:34:54 +0000 (22 15:34 -0500)
tree9be8dc5164950d61071a2254a452d7170221be6d
parent0664cc7a281287679263845f5974b1e598327942
add greylag-flatten-fasta, fix bugs in fasta reader

Refactored FASTA reader code for common use.  Fixed some corner cases (empty
sequence, empty defline, etc.)

More cleanups of greylag.py (chase_error) error handling.  This should
probably just be replaced with an Exception.
Makefile
greylag.py
greylag_flatten_fasta.py [new file with mode: 0755]
greylag_shuffle_database.py
greylag_sqt.py
greylag_validate.py