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2023-10-03	Lukas Mueller	Merge pull request #42 from solgenomics/topic/duplicate_imag...	commit \| commitdiff \| tree
2023-10-02	Lukas Mueller	add flag to process_image function for duplicate detection.	commit \| commitdiff \| tree
2023-09-21	Lukas Mueller	Merge pull request #41 from solgenomics/topic/duplicate_imag...	commit \| commitdiff \| tree
2023-07-18	Lukas Mueller	fix foreign key name in blast_db_blast_db_group table...	commit \| commitdiff \| tree
2023-05-08	Lukas Mueller	tweak debug output.	commit \| commitdiff \| tree
2023-04-11	Lukas Mueller	implement is_duplicate function, to check for duplicates...	commit \| commitdiff \| tree
2023-04-10	Lukas Mueller	check if images are duplicates.	commit \| commitdiff \| tree
2022-11-14	Lukas Mueller	Merge pull request #39 from solgenomics/topic/fix_user_creation	commit \| commitdiff \| tree
2022-11-10	Lukas Mueller	fix return value for sp_login table.	commit \| commitdiff \| tree
2022-06-29	Lukas Mueller	Merge pull request #33 from solgenomics/topic/metadata_schem...	commit \| commitdiff \| tree
2021-06-15	Lukas Mueller	Merge pull request #36 from solgenomics/topic/clone_ordering	commit \| commitdiff \| tree
2021-03-07	Lukas Mueller	add order dbix classes.	commit \| commitdiff \| tree
2021-01-25	Lukas Mueller	Merge pull request #30 from solgenomics/fix-load-map	commit \| commitdiff \| tree
2021-01-25	Lukas Mueller	Merge pull request #32 from solgenomics/public-dataset	commit \| commitdiff \| tree
2020-09-28	Lukas Mueller	Merge pull request #31 from solgenomics/topic/deprecated_phe...	commit \| commitdiff \| tree
2019-11-04	Lukas Mueller	Merge pull request #25 from solgenomics/topic/remote_slurm	commit \| commitdiff \| tree
2019-11-02	Lukas Mueller	fix script name in POD.	commit \| commitdiff \| tree
2019-09-25	Lukas Mueller	change alive function to call a script on the cluster...	commit \| commitdiff \| tree
2019-09-25	Lukas Mueller	make script executable.	commit \| commitdiff \| tree
2019-09-25	Lukas Mueller	a script that will check whether a given job is running...	commit \| commitdiff \| tree
2019-09-24	Lukas Mueller	implement remote slurm execution.	commit \| commitdiff \| tree
2018-08-14	Lukas Mueller	Merge branch 'master' into topic/image_order	commit \| commitdiff \| tree
2018-08-08	Lukas Mueller	Make image order editable on detail pages.	commit \| commitdiff \| tree
2018-07-19	Lukas Mueller	allow process image even after image_id is available.	commit \| commitdiff \| tree
2018-07-02	Lukas Mueller	Also delete image references from tag linking table...	commit \| commitdiff \| tree
2018-07-02	Lukas Mueller	Also delete image references from tag linking table.	commit \| commitdiff \| tree
2018-07-02	Lukas Mueller	tweak CXGN::Image for image deletion script.	commit \| commitdiff \| tree
2018-06-29	Lukas Mueller	when merging stocks, warn if the parents are different.	commit \| commitdiff \| tree
2018-06-29	Lukas Mueller	fix cv for female_parent and male_parent terms.	commit \| commitdiff \| tree
2018-06-01	Lukas Mueller	also export PERL5LIB env variable.	commit \| commitdiff \| tree
2018-05-31	Lukas Mueller	Merge pull request #13 from solgenomics/topic/slurm_backend	commit \| commitdiff \| tree
2018-05-31	Lukas Mueller	file location check for cluster jobs should warn only.	commit \| commitdiff \| tree
2018-05-03	Lukas Mueller	add a couple of functions to support encrypted password...	commit \| commitdiff \| tree
2018-04-12	Lukas Mueller	create a died file when the slurm job dies.	commit \| commitdiff \| tree
2018-04-11	Lukas Mueller	fix conflict.	commit \| commitdiff \| tree
2018-04-10	Lukas Mueller	changes to slurm implementation.	commit \| commitdiff \| tree
2018-02-09	Lukas Mueller	delete old un-used objects from tools run.	commit \| commitdiff \| tree
2018-02-09	Lukas Mueller	make CXGN Tools run.t tests pass; work in progress.	commit \| commitdiff \| tree
2018-02-04	Lukas Mueller	adapt Torque backend to new CXGN::Tools::Run object.	commit \| commitdiff \| tree
2018-02-04	Lukas Mueller	remove deprecated use of isa; do not load try to a...	commit \| commitdiff \| tree
2017-12-23	Lukas Mueller	moosify Run.pm; refactor slurm as a Moose plugin; remove...	commit \| commitdiff \| tree
2017-12-07	Lukas Mueller	move RunModified to Run	commit \| commitdiff \| tree
2017-12-07	Lukas Mueller	merge conflicts in Slurm.pm	commit \| commitdiff \| tree
2017-12-07	Lukas Mueller	recover lost (and slightly modified) Slurm.pm object.	commit \| commitdiff \| tree
2017-12-05	Lukas Mueller	modify stock object such that parents are not duplicated...	commit \| commitdiff \| tree
2017-12-05	Lukas Mueller	read_commented_file should not fail if file does not...	commit \| commitdiff \| tree
2016-11-10	Lukas Mueller	Add information that CXGN::BlastDB and bin/bdb_update_blast_...	commit \| commitdiff \| tree
2016-05-12	Lukas Mueller	code clean up and add tests.	commit \| commitdiff \| tree
2016-05-12	Lukas Mueller	fix conflicts from merge with master.	commit \| commitdiff \| tree
2016-05-11	Lukas Mueller	factor out two objects for torque and slurm respectively.	commit \| commitdiff \| tree
2016-04-30	Lukas Mueller	adapt CXGN::Tools::Run for the new slurm-torque compatibilit...	commit \| commitdiff \| tree
2016-04-11	Lukas Mueller	start to disentangle this complex object using a plugin...	commit \| commitdiff \| tree
2015-11-29	Lukas Mueller	remove unsupported usage of UNIVERSAL::isa	commit \| commitdiff \| tree
2015-11-02	Lukas Mueller	fix conflict in CXGN::Chado::Stock.	commit \| commitdiff \| tree
2015-11-02	Lukas Mueller	implement retrieval of pedigree based on Jeremys Bio...	commit \| commitdiff \| tree
2015-10-07	Lukas Mueller	fix counts and rank max.	commit \| commitdiff \| tree
2015-10-06	Lukas Mueller	add deletion option for merge function.	commit \| commitdiff \| tree
2015-10-05	Lukas Mueller	tweaking return data for pedigree.	commit \| commitdiff \| tree
2015-10-05	Lukas Mueller	Merge branch 'master' into topic/parent_string	commit \| commitdiff \| tree
2015-10-05	Lukas Mueller	add more STDERR output for merge function.	commit \| commitdiff \| tree
2015-09-22	Lukas Mueller	tweak experiment relationship transfer.	commit \| commitdiff \| tree
2015-08-25	Lukas Mueller	add functionality to get a pedigree string from the...	commit \| commitdiff \| tree
2015-07-14	Lukas Mueller	add another missing group by parameter.	commit \| commitdiff \| tree
2015-07-14	Lukas Mueller	add missing group by field.	commit \| commitdiff \| tree
2015-07-14	Lukas Mueller	add two functions, get_trials, and get_stock_list,...	commit \| commitdiff \| tree
2015-02-26	Lukas Mueller	add DBIx::Class definition files for the people database.	commit \| commitdiff \| tree
2015-02-18	Lukas Mueller	also allow the /tmp dir, but emit a warning that this...	commit \| commitdiff \| tree
2014-04-09	Lukas Mueller	also allow colons in Marker names.	commit \| commitdiff \| tree
2013-12-18	Lukas Mueller	remove mod_perl limitation. Its not true.	commit \| commitdiff \| tree
2013-11-07	Lukas Mueller	tweak return value in wantarray context.	commit \| commitdiff \| tree
2013-11-07	Lukas Mueller	fix typos and get it to compile (argh)	commit \| commitdiff \| tree
2013-11-07	Lukas Mueller	modify the new_by_name function such that it returns...	commit \| commitdiff \| tree
2013-07-14	Lukas Mueller	adding a linking table between blast_db and blast_db_group...	commit \| commitdiff \| tree
2013-06-15	Lukas Mueller	update defaults.	commit \| commitdiff \| tree
2013-06-14	Lukas Mueller	construct url with ampersand as separators.	commit \| commitdiff \| tree
2013-05-23	Lukas Mueller	change rules for cluster accessible dirs.	commit \| commitdiff \| tree
2013-03-29	Lukas Mueller	store org info.	commit \| commitdiff \| tree
2013-03-29	Lukas Mueller	move accessor for organization to Login object.	commit \| commitdiff \| tree
2013-03-26	Lukas Mueller	check if row_label is defined, dont expect true value.	commit \| commitdiff \| tree
2013-03-26	Lukas Mueller	make linkage group name checking less stringent.	commit \| commitdiff \| tree
2012-11-07	Lukas Mueller	make exception for Solyc IDs as marker names.	commit \| commitdiff \| tree
2012-06-11	Lukas Mueller	relax linkage group naming.	commit \| commitdiff \| tree
2012-05-07	Lukas Mueller	merge files.	commit \| commitdiff \| tree
2012-05-07	Lukas Mueller	add dependency back for CXGN::DB::Object, because subclasses...	commit \| commitdiff \| tree
2011-05-13	Lukas Mueller	fixing an sql query causing problems in the map loading...	commit \| commitdiff \| tree
2010-05-11	Lukas Mueller	added more POD.	commit \| commitdiff \| tree
2010-05-11	Lukas Mueller	forgot to adapt the POD to the new parameter in the...	commit \| commitdiff \| tree
2010-05-10	Lukas Mueller	Removing an invocation of CXGN::Page in a class	commit \| commitdiff \| tree
2010-05-03	Lukas Mueller	manually perltidied and added some more sanely name...	commit \| commitdiff \| tree
2010-04-02	Lukas Mueller	Tamed POD. Many functions still have no POD...	commit \| commitdiff \| tree
2010-04-01	Lukas Mueller	More taming of the POD.	commit \| commitdiff \| tree
2010-04-01	Lukas Mueller	Added some POD: A usage and a description section.	commit \| commitdiff \| tree
2010-03-08	Lukas Mueller	removed parsing of sgn marker names. closes #116. Other...	commit \| commitdiff \| tree
2010-03-03	Lukas Mueller	removed marker identification from the test. Markers...	commit \| commitdiff \| tree
2010-03-03	Lukas Mueller	moving the Cview test directories	commit \| commitdiff \| tree
2010-03-02	Lukas Mueller	Moving Cview to its own component.	commit \| commitdiff \| tree
2010-02-24	Lukas Mueller	fixing some temp_dirs...	commit \| commitdiff \| tree
2010-02-23	Lukas Mueller	Doing more external parametrization of the ITAG map	commit \| commitdiff \| tree
2010-02-23	Lukas Mueller	this factory object now configures all the maps for...	commit \| commitdiff \| tree
2010-02-23	Lukas Mueller	small edits in the POD.	commit \| commitdiff \| tree
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